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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259741 through 18771 annotations produced 1 hits



(CG42395):

Annotation Number : S.CX001053
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259741
Gbrowse : chrX:9469355-9469847 (-) // 100.0 //
Probeset : 1626216_at
Accessions : protein= NP_001138182;, nucleotide= NM_001144710;
FlyMine data for FBgn0259741.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.20Down
Head0 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.30Down
Salivary gland2 ± 00 of 4 0.32Down
Crop1 ± 10 of 4 0.20Down
Midgut1 ± 00 of 4 0.20Down
Tubule2 ± 00 of 4 0.40Down
Hindgut3 ± 10 of 4 0.40None
Heart0 ± 00 of 4 0.11Down
Fat body1 ± 00 of 4 0.17Down
Ovary0 ± 00 of 4 0.10Down
Testis134 ± 44 of 417.00Up
Male accessory glands2 ± 00 of 4 0.30Down
Virgin spermatheca1 ± 00 of 4 0.12Down
Mated spermatheca3 ± 10 of 4 0.45None
Adult carcass2 ± 00 of 4 0.30Down
Larval CNS1 ± 00 of 4 0.14Down
Larval Salivary gland0 ± 00 of 4 0.08Down
Larval midgut6 ± 10 of 4 0.81None
Larval tubule21 ± 42 of 4 2.70None
Larval hindgut9 ± 00 of 4 1.15None
Larval fat body17 ± 51 of 4 2.20None
Larval trachea1 ± 10 of 4 0.20Down
Larval carcass2 ± 00 of 4 0.33Down
S2 cells (growing)10 ± 13 of 4 1.39None
Whole fly7 ± 10 of 4

Looking for FBgn0259741. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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