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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259745 through 18771 annotations produced 1 hits



dappled /// dappled (dpld /// wech):

Annotation Number : CG1624
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259745
Gbrowse : chr2R:3369374-3377368 (-) // 100.0 //
Probeset : 1639785_s_at
Accessions : protein= NP_001137614; /// NP_001137615; /// NP_524772; /// NP_724567; /// NP_724568;, nucleotide= NM_001144142; /// NM_001144143; /// NM_080033; /// NM_165533; /// NM_165534;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005927 // muscle tendon junction // inferred from d
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0259745.
BioGrid reports that CG1624 interacts with CG2925 CG7173 CG3978 .
VDRC has 2 RNAi stocks for FBgn0259745 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain152 ± 74 of 4 0.90None
Head21 ± 34 of 4 0.10Down
Eye56 ± 74 of 4 0.33Down
Thoracicoabdominal ganglion52 ± 114 of 4 0.30Down
Salivary gland20 ± 24 of 4 0.12Down
Crop31 ± 34 of 4 0.20Down
Midgut21 ± 04 of 4 0.10Down
Tubule29 ± 14 of 4 0.20Down
Hindgut19 ± 14 of 4 0.10Down
Heart45 ± 24 of 4 0.27Down
Fat body30 ± 64 of 4 0.18Down
Ovary739 ± 134 of 4 4.30Up
Testis8 ± 04 of 4 0.00Down
Male accessory glands73 ± 64 of 4 0.40Down
Virgin spermatheca31 ± 14 of 4 0.19Down
Mated spermatheca39 ± 94 of 4 0.23Down
Adult carcass20 ± 34 of 4 0.10Down
Larval CNS119 ± 124 of 4 0.70Down
Larval Salivary gland10 ± 22 of 4 0.06Down
Larval midgut10 ± 12 of 4 0.06Down
Larval tubule26 ± 24 of 4 0.20Down
Larval hindgut9 ± 14 of 4 0.05Down
Larval fat body7 ± 11 of 4 0.00Down
Larval trachea52 ± 44 of 4 0.31Down
Larval carcass10 ± 03 of 4 0.06Down
S2 cells (growing)177 ± 114 of 4 1.04None
Whole fly171 ± 154 of 4

Looking for FBgn0259745. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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