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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259749 through 18771 annotations produced 1 hits



cabrio (mmy):

Annotation Number : CG9535
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259749
Gbrowse : chr2L:6468537-6473919 (-) // 100.0 //
Probeset : 1634606_a_at
Accessions : protein= NP_609032; /// NP_723183;, nucleotide= NM_135188; /// NM_164690;
Pathway : open tracheal system // inferred from mutant phenotype"
FlyMine data for FBgn0259749.
VDRC has 1 RNAi stocks for FBgn0259749 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain248 ± 54 of 4 1.00None
Head221 ± 34 of 4 0.90None
Eye153 ± 54 of 4 0.64Down
Thoracicoabdominal ganglion317 ± 34 of 4 1.30Up
Salivary gland2348 ± 354 of 4 9.84Up
Crop270 ± 54 of 4 1.10None
Midgut561 ± 274 of 4 2.40Up
Tubule2124 ± 2804 of 4 8.90Up
Hindgut398 ± 164 of 4 1.70Up
Heart161 ± 84 of 4 0.68Down
Fat body139 ± 104 of 4 0.58Down
Ovary329 ± 54 of 4 1.40Up
Testis105 ± 34 of 4 0.40Down
Male accessory glands874 ± 254 of 4 3.70Up
Virgin spermatheca297 ± 34 of 4 1.25Up
Mated spermatheca295 ± 134 of 4 1.24Up
Adult carcass195 ± 54 of 4 0.80None
Larval CNS139 ± 44 of 4 0.58Down
Larval Salivary gland678 ± 64 of 4 2.84Up
Larval midgut368 ± 44 of 4 1.55Up
Larval tubule1196 ± 434 of 4 5.00Up
Larval hindgut347 ± 164 of 4 1.45Up
Larval fat body288 ± 214 of 4 1.20None
Larval trachea249 ± 174 of 4 1.04None
Larval carcass1016 ± 1614 of 4 4.26Up
S2 cells (growing)312 ± 64 of 4 1.31Up
Whole fly238 ± 154 of 4

Looking for FBgn0259749. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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