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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259785 through 18771 annotations produced 1 hits



putzig (pzg):

Annotation Number : CG7752
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259785
Gbrowse : chr3L:21279162-21283410 (+) // 100.0 //
Probeset : 1630682_at
Accessions : protein= NP_649297;, nucleotide= NM_141040;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable autho
FlyMine data for FBgn0259785.
TRiP has 1 RNAi stocks for FBgn0259785 available for purchase.
VDRC has 2 RNAi stocks for FBgn0259785 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain222 ± 84 of 4 3.00Up
Head99 ± 84 of 4 1.30Up
Eye66 ± 24 of 4 0.90None
Thoracicoabdominal ganglion143 ± 44 of 4 1.90Up
Salivary gland108 ± 64 of 4 1.46Up
Crop55 ± 24 of 4 0.70Down
Midgut76 ± 24 of 4 1.00None
Tubule49 ± 24 of 4 0.70Down
Hindgut63 ± 24 of 4 0.80None
Heart40 ± 44 of 4 0.55Down
Fat body83 ± 174 of 4 1.13None
Ovary69 ± 14 of 4 0.90None
Testis19 ± 04 of 4 0.30Down
Male accessory glands206 ± 94 of 4 2.80Up
Virgin spermatheca66 ± 34 of 4 0.89None
Mated spermatheca76 ± 114 of 4 1.03None
Adult carcass74 ± 34 of 4 1.00None
Larval CNS256 ± 224 of 4 3.44Up
Larval Salivary gland108 ± 84 of 4 1.45Up
Larval midgut63 ± 104 of 4 0.85None
Larval tubule52 ± 24 of 4 0.70Down
Larval hindgut62 ± 34 of 4 0.84None
Larval fat body52 ± 24 of 4 0.70Down
Larval trachea86 ± 74 of 4 1.16None
Larval carcass74 ± 24 of 4 1.00None
S2 cells (growing)78 ± 54 of 4 1.05None
Whole fly74 ± 44 of 4

Looking for FBgn0259785. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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