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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259789 through 18771 annotations produced 1 hits



vielfaltig (vfl):

Annotation Number : CG12701
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259789
Gbrowse : chrX:19670019-19676961 (-) // 100.0 //
Probeset : 1638370_s_at
Accessions : protein= NP_608356; /// NP_728304;, nucleotide= NM_134512; /// NM_167685;
Pathway : 0000785 // chromatin // inferred from direct assay /// 0005622 // intracellular // inferred from electronic annotation /
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0259789.
Homophila reports that CG12701 is a close match (3e-11) to human gene ZBTB16;ZNF145;PLZF (NP_005997), a gene associated with Leukemia, acute promyelocytic, PL2F/RARA type (3).
BioGrid reports that CG12701 interacts with CG13312 CG31721 CG31999 CG6459 CG6996 CG9192 CG13859 .
TRiP has 2 RNAi stocks for FBgn0259789 available for purchase.
VDRC has 2 RNAi stocks for FBgn0259789 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 03 of 4 0.00Down
Head7 00 of 4 0.00Down
Eye4 20 of 4 0.02Down
Thoracicoabdominal ganglion8 21 of 4 0.00Down
Salivary gland6 20 of 4 0.04Down
Crop29 24 of 4 0.20Down
Midgut2 10 of 4 0.00Down
Tubule8 60 of 4 0.00Down
Hindgut8 00 of 4 0.00Down
Heart1 10 of 4 0.01Down
Fat body18 30 of 4 0.10Down
Ovary789 94 of 4 4.30Up
Testis18 24 of 4 0.10Down
Male accessory glands6 30 of 4 0.00Down
Virgin spermatheca12 10 of 4 0.07Down
Mated spermatheca14 13 of 4 0.08Down
Adult carcass15 30 of 4 0.10Down
Larval CNS557 334 of 4 3.06Up
Larval Salivary gland25 40 of 4 0.14Down
Larval midgut10 30 of 4 0.05Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut50 24 of 4 0.28Down
Larval fat body18 21 of 4 0.10Down
Larval trachea501 314 of 4 2.75Up
Larval carcass93 114 of 4 0.51Down
S2 cells (growing)135 34 of 4 0.74None
Whole fly182 214 of 4

Looking for FBgn0259789. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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