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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259822 through 18771 annotations produced 3 hits



calcium channel beta subunit (Ca-beta):

Annotation Number : CG6320
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259822
Gbrowse : chr2L:11160244-11170471 (-) // 100.0 //
Probeset : 1638440_at
Accessions : protein= NP_523546; /// NP_723661; /// NP_995684; /// NP_995685;, nucleotide= NM_078822; /// NM_164959; /// NM_205962; /// NM_205963;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // non-trac
Interpro : 0005245 // voltage-gated calcium channel activity // inferred from sequence or structural similarity /// 0005245 // volt
FlyMine data for FBgn0259822.
Homophila reports that CG6320 is a close match (1e-30) to human gene CACNB2 (NP_963884), a gene associated with Brugada syndrome 4, 611876 (3).
TRiP has 1 RNAi stocks for FBgn0259822 available for purchase.
VDRC has 3 RNAi stocks for FBgn0259822 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 01 of 4 1.20None
Head3 00 of 4 0.70None
Eye1 00 of 4 0.26None
Thoracicoabdominal ganglion4 10 of 4 1.10None
Salivary gland8 40 of 4 1.93None
Crop4 10 of 4 1.00None
Midgut1 00 of 4 0.30None
Tubule3 10 of 4 0.80None
Hindgut3 00 of 4 0.80None
Heart1 00 of 4 0.38None
Fat body2 10 of 4 0.62None
Ovary1 00 of 4 0.40None
Testis1 00 of 4 0.40None
Male accessory glands1 00 of 4 0.40None
Virgin spermatheca1 00 of 4 0.31None
Mated spermatheca2 00 of 4 0.61None
Adult carcass7 30 of 4 1.70None
Larval CNS2 10 of 4 0.57None
Larval Salivary gland10 32 of 4 2.49None
Larval midgut1 00 of 4 0.25None
Larval tubule3 10 of 4 0.90None
Larval hindgut5 10 of 4 1.22None
Larval fat body6 20 of 4 1.60None
Larval trachea4 21 of 4 0.96None
Larval carcass1 00 of 4 0.32None
S2 cells (growing)2 00 of 4 0.48None
Whole fly4 10 of 4



calcium channel beta subunit (Ca-beta):

Annotation Number : CG33305
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259822
Gbrowse : chr2L:11159269-11160178 (-) // 100.0 //
Probeset : 1640620_at
Accessions : protein= NP_523546; /// NP_723661; /// NP_995684; /// NP_995685;, nucleotide= NM_078822; /// NM_164959; /// NM_205962; /// NM_205963;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // non-trac
Interpro : 0005245 // voltage-gated calcium channel activity // inferred from sequence or structural similarity /// 0005245 // volt
FlyMine data for FBgn0259822.
TRiP has 1 RNAi stocks for FBgn0259822 available for purchase.
VDRC has 3 RNAi stocks for FBgn0259822 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 24 of 4 5.30Up
Head10 00 of 4 2.70Up
Eye2 00 of 4 0.51None
Thoracicoabdominal ganglion9 40 of 4 2.50None
Salivary gland3 00 of 4 0.79None
Crop8 20 of 4 2.10None
Midgut9 30 of 4 2.40None
Tubule1 00 of 4 0.40Down
Hindgut9 30 of 4 2.40None
Heart3 10 of 4 0.87None
Fat body4 20 of 4 1.13None
Ovary1 00 of 4 0.30None
Testis7 10 of 4 1.90None
Male accessory glands7 30 of 4 1.90None
Virgin spermatheca1 00 of 4 0.42None
Mated spermatheca1 00 of 4 0.28None
Adult carcass11 50 of 4 3.00None
Larval CNS4 10 of 4 1.06None
Larval Salivary gland5 10 of 4 1.37None
Larval midgut6 20 of 4 1.78None
Larval tubule5 20 of 4 1.30None
Larval hindgut3 10 of 4 0.94None
Larval fat body2 00 of 4 0.70None
Larval trachea1 00 of 4 0.32None
Larval carcass3 00 of 4 0.83None
S2 cells (growing)2 00 of 4 0.54None
Whole fly3 10 of 4



calcium channel beta subunit (Ca-beta):

Annotation Number : CG6320
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259822
Gbrowse : chr2L:11164233-11170471 (-) // 99.43 //
Probeset : 1628331_at
Accessions : protein= NP_523546; /// NP_723661; /// NP_995684; /// NP_995685;, nucleotide= NM_078822; /// NM_164959; /// NM_205962; /// NM_205963;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // non-trac
Interpro : 0005245 // voltage-gated calcium channel activity // inferred from sequence or structural similarity /// 0005245 // volt
FlyMine data for FBgn0259822.
Homophila reports that CG6320 is a close match (1e-30) to human gene CACNB2 (NP_963884), a gene associated with Brugada syndrome 4, 611876 (3).
TRiP has 1 RNAi stocks for FBgn0259822 available for purchase.
VDRC has 3 RNAi stocks for FBgn0259822 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain187 84 of 426.50Up
Head8 12 of 4 1.20None
Eye53 84 of 4 7.56Up
Thoracicoabdominal ganglion111 194 of 415.70Up
Salivary gland15 30 of 4 2.11None
Crop112 104 of 415.90Up
Midgut7 11 of 4 1.10None
Tubule4 00 of 4 0.70Down
Hindgut40 34 of 4 5.70Up
Heart36 54 of 4 5.10Up
Fat body19 84 of 4 2.75None
Ovary2 00 of 4 0.30Down
Testis3 00 of 4 0.40Down
Male accessory glands8 21 of 4 1.10None
Virgin spermatheca19 33 of 4 2.77Up
Mated spermatheca26 83 of 4 3.79None
Adult carcass19 62 of 4 2.80None
Larval CNS23 24 of 4 3.28Up
Larval Salivary gland4 30 of 4 0.68None
Larval midgut6 10 of 4 0.85None
Larval tubule6 10 of 4 1.00None
Larval hindgut5 12 of 4 0.80None
Larval fat body5 10 of 4 0.70None
Larval trachea3 31 of 4 0.47None
Larval carcass4 10 of 4 0.63None
S2 cells (growing)2 00 of 4 0.41Down
Whole fly7 02 of 4

Looking for FBgn0259822. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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