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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0259834 through 18771 annotations produced 1 hits

outsiders (out):

Annotation Number : CG8062
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259834
Gbrowse : chrX:19205060-19216098 (-) // 100.0 //
Probeset : 1624181_at
Accessions : protein= NP_573378;, nucleotide= NM_133150;
Interpro : 0008028 // monocarboxylic acid transmembrane transporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0259834.
Homophila reports that CG8062 is a close match (4e-14) to human gene HHF7;MCT1;SLC16A1 (NP_003042), a gene associated with Erythrocyte lactate transporter defect, 245340 (3);Hyperinsulinemic hypoglycemia, familial, 7, 610021 (3).
VDRC has 3 RNAi stocks for FBgn0259834 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 14 of 4 0.20Down
Head89 94 of 4 0.80None
Eye61 34 of 4 0.53Down
Thoracicoabdominal ganglion18 24 of 4 0.20Down
Salivary gland188 84 of 4 1.64Up
Crop139 44 of 4 1.20None
Midgut311 164 of 4 2.70Up
Tubule55 163 of 4 0.50Down
Hindgut349 84 of 4 3.00Up
Heart63 14 of 4 0.55Down
Fat body68 104 of 4 0.60Down
Ovary196 44 of 4 1.70Up
Testis157 84 of 4 1.40None
Male accessory glands22 20 of 4 0.20Down
Virgin spermatheca51 24 of 4 0.44Down
Mated spermatheca43 14 of 4 0.38Down
Adult carcass84 74 of 4 0.70None
Larval CNS17 44 of 4 0.15Down
Larval Salivary gland21 13 of 4 0.19Down
Larval midgut131 74 of 4 1.14None
Larval tubule40 34 of 4 0.40Down
Larval hindgut187 44 of 4 1.63Up
Larval fat body53 144 of 4 0.50Down
Larval trachea80 204 of 4 0.70None
Larval carcass38 41 of 4 0.33Down
S2 cells (growing)52 44 of 4 0.45Down
Whole fly115 144 of 4

Looking for FBgn0259834. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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