FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259878 through 18771 annotations produced 2 hits

Follistatin (Fs):

Annotation Number : CG12956
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259878
Gbrowse : chr2R:11119471-11129084 (-) // 100.0 //
Probeset : 1632824_at
Accessions : protein= NP_652376;, nucleotide= NM_144119; /// NM_144119;
Pathway : 0005576 // extracellular region // inferred from direct assay
FlyMine data for FBgn0259878.
VDRC has 4 RNAi stocks for FBgn0259878 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	17 ± 1	4 of 4	1.00	None
Head	28 ± 1	4 of 4	1.60	Up
Eye	42 ± 4	4 of 4	2.42	Up
Thoracicoabdominal ganglion	10 ± 1	3 of 4	0.60	None
Salivary gland	17 ± 2	0 of 4	1.01	None
Crop	34 ± 1	4 of 4	1.90	Up
Midgut	8 ± 2	2 of 4	0.50	Down
Tubule	9 ± 0	0 of 4	0.50	Down
Hindgut	27 ± 2	4 of 4	1.60	Up
Heart	4 ± 1	0 of 4	0.24	Down
Fat body	10 ± 0	1 of 4	0.60	None
Ovary	9 ± 2	3 of 4	0.50	None
Testis	12 ± 2	4 of 4	0.70	None
Male accessory glands	12 ± 3	1 of 4	0.70	None
Virgin spermatheca	3 ± 0	1 of 4	0.20	Down
Mated spermatheca	4 ± 1	1 of 4	0.23	Down
Adult carcass	6 ± 1	0 of 4	0.40	Down
Larval CNS	4 ± 1	0 of 4	0.24	Down
Larval Salivary gland	5 ± 1	0 of 4	0.32	Down
Larval midgut	7 ± 1	2 of 4	0.42	Down
Larval tubule	9 ± 1	3 of 4	0.50	Down
Larval hindgut	9 ± 1	4 of 4	0.52	Down
Larval fat body	13 ± 1	0 of 4	0.80	None
Larval trachea	6 ± 4	2 of 4	0.35	Down
Larval carcass	7 ± 1	0 of 4	0.44	Down
S2 cells (growing)	8 ± 0	1 of 4	0.47	Down
Whole fly	17 ± 2	3 of 4

Follistatin (Fs):

Annotation Number : CG12955
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259878
Gbrowse : chr2R:11111646-11111982 (-) // 100.0 //
Probeset : 1637541_at
Accessions : protein= NP_652376;, nucleotide= NM_144119; /// NM_144119;
Pathway : 0005576 // extracellular region // inferred from direct assay
FlyMine data for FBgn0259878.
VDRC has 4 RNAi stocks for FBgn0259878 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	27 ± 0	4 of 4	1.50	Up
Head	42 ± 4	4 of 4	2.30	Up
Eye	140 ± 9	4 of 4	7.67	Up
Thoracicoabdominal ganglion	14 ± 1	3 of 4	0.80	None
Salivary gland	10 ± 3	0 of 4	0.58	None
Crop	69 ± 5	4 of 4	3.80	Up
Midgut	10 ± 1	0 of 4	0.60	Down
Tubule	6 ± 0	0 of 4	0.30	Down
Hindgut	53 ± 3	4 of 4	2.90	Up
Heart	12 ± 1	4 of 4	0.70	Down
Fat body	10 ± 2	2 of 4	0.58	Down
Ovary	19 ± 1	4 of 4	1.10	None
Testis	6 ± 0	0 of 4	0.40	Down
Male accessory glands	7 ± 2	0 of 4	0.40	Down
Virgin spermatheca	3 ± 0	0 of 4	0.21	Down
Mated spermatheca	4 ± 0	0 of 4	0.24	Down
Adult carcass	7 ± 2	0 of 4	0.40	Down
Larval CNS	9 ± 2	4 of 4	0.50	Down
Larval Salivary gland	5 ± 1	0 of 4	0.30	Down
Larval midgut	11 ± 1	1 of 4	0.64	Down
Larval tubule	3 ± 1	0 of 4	0.20	Down
Larval hindgut	11 ± 1	0 of 4	0.61	Down
Larval fat body	6 ± 1	0 of 4	0.40	Down
Larval trachea	8 ± 3	1 of 4	0.46	Down
Larval carcass	8 ± 1	0 of 4	0.48	Down
S2 cells (growing)	8 ± 1	2 of 4	0.49	Down
Whole fly	18 ± 0	4 of 4

Looking for FBgn0259878. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720