FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259896 through 18771 annotations produced 1 hits

nimrod C1 (nimC1):

Annotation Number : CG8942
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259896
Gbrowse : chr2L:13974116-13976753 (-) // 100.0 //
Probeset : 1639502_at
Accessions : protein= NP_609693;, nucleotide= NM_135849;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0017147 // Wnt-protein binding // inferred from seq
FlyMine data for FBgn0259896.
Homophila reports that CG8942 is a close match (1e-19) to human gene TNX;TNXB;TNXB1;TNXB2;TNXBS (NP_061978), a gene associated with Ehlers-Danlos due to tenascin X deficiency, 606408 (3);Ehlers-Danlos syndrome, hypermobility type, 130020 (3).
BioGrid reports that CG8942 interacts with CG8981 CG9075 CG9312 CG9768 .
TRiP has 1 RNAi stocks for FBgn0259896 available for purchase.
VDRC has 6 RNAi stocks for FBgn0259896 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	36 ± 5	4 of 4	1.70	None
Head	135 ± 10	4 of 4	6.30	Up
Eye	34 ± 7	4 of 4	1.62	None
Thoracicoabdominal ganglion	24 ± 2	4 of 4	1.10	None
Salivary gland	20 ± 4	2 of 4	0.97	None
Crop	12 ± 1	2 of 4	0.60	None
Midgut	14 ± 3	1 of 4	0.70	None
Tubule	5 ± 0	0 of 4	0.20	Down
Hindgut	5 ± 2	1 of 4	0.30	Down
Heart	702 ± 16	4 of 4	32.87	Up
Fat body	33 ± 7	4 of 4	1.56	None
Ovary	3 ± 1	0 of 4	0.20	Down
Testis	13 ± 1	4 of 4	0.60	None
Male accessory glands	6 ± 0	0 of 4	0.30	Down
Virgin spermatheca	17 ± 0	4 of 4	0.79	None
Mated spermatheca	19 ± 2	4 of 4	0.90	None
Adult carcass	153 ± 6	4 of 4	7.20	Up
Larval CNS	9 ± 1	3 of 4	0.42	Down
Larval Salivary gland	5 ± 2	0 of 4	0.26	Down
Larval midgut	8 ± 2	0 of 4	0.40	Down
Larval tubule	4 ± 1	0 of 4	0.20	Down
Larval hindgut	21 ± 3	4 of 4	0.99	None
Larval fat body	26 ± 6	3 of 4	1.20	None
Larval trachea	86 ± 21	4 of 4	4.02	Up
Larval carcass	213 ± 14	4 of 4	9.97	Up
S2 cells (growing)	6 ± 0	0 of 4	0.30	Down
Whole fly	21 ± 3	4 of 4

Looking for FBgn0259896. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720