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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259916 through 18771 annotations produced 1 hits



/// (CG42445 /// CG7498):

Annotation Number : CG7498
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259916
Gbrowse : chr3L:8147879-8151930 (-) // 100.0 //
Probeset : 1623339_at
Accessions : protein= NP_001163378;, nucleotide= NM_001169907;
FlyMine data for FBgn0259916.
TRiP has 1 RNAi stocks for FBgn0259916 available for purchase.
VDRC has 1 RNAi stocks for FBgn0259916 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 ± 14 of 4 0.40Down
Head71 ± 74 of 4 0.90None
Eye98 ± 54 of 4 1.20None
Thoracicoabdominal ganglion36 ± 24 of 4 0.50Down
Salivary gland244 ± 84 of 4 2.99Up
Crop110 ± 34 of 4 1.40Up
Midgut75 ± 14 of 4 0.90None
Tubule134 ± 274 of 4 1.60None
Hindgut133 ± 94 of 4 1.60Up
Heart113 ± 64 of 4 1.38Up
Fat body121 ± 114 of 4 1.49Up
Ovary155 ± 14 of 4 1.90Up
Testis16 ± 13 of 4 0.20Down
Male accessory glands69 ± 44 of 4 0.80None
Virgin spermatheca153 ± 64 of 4 1.87Up
Mated spermatheca136 ± 84 of 4 1.66Up
Adult carcass72 ± 14 of 4 0.90None
Larval CNS36 ± 54 of 4 0.44Down
Larval Salivary gland73 ± 24 of 4 0.90None
Larval midgut30 ± 13 of 4 0.37Down
Larval tubule86 ± 34 of 4 1.10None
Larval hindgut92 ± 34 of 4 1.13None
Larval fat body245 ± 324 of 4 3.00Up
Larval trachea101 ± 124 of 4 1.24None
Larval carcass72 ± 24 of 4 0.88None
S2 cells (growing)99 ± 34 of 4 1.21None
Whole fly81 ± 64 of 4

Looking for FBgn0259916. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime