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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259922 through 18771 annotations produced 1 hits



Skadu (CG42448):

Annotation Number : S.C2L002031
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259922
Gbrowse : chr2L:15545989-15548021 (+) // 100.0 //
Probeset : 1625540_at
Accessions : protein= NP_001162985;, nucleotide= NM_001169514;
Pathway : 0000785 // chromatin // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annotatio
Interpro : 0003682 // chromatin binding // inferred from electronic annotation
FlyMine data for FBgn0259922.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.07Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland2 ± 10 of 4 0.08Down
Crop1 ± 00 of 4 0.10Down
Midgut0 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.04Down
Fat body2 ± 20 of 4 0.08Down
Ovary0 ± 00 of 4 0.00Down
Testis542 ± 24 of 420.60Up
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca3 ± 00 of 4 0.12Down
Mated spermatheca1 ± 00 of 4 0.07Down
Adult carcass2 ± 10 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.03Down
Larval Salivary gland2 ± 00 of 4 0.11Down
Larval midgut1 ± 00 of 4 0.06Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.04Down
Larval fat body43 ± 292 of 4 1.70None
Larval trachea2 ± 20 of 4 0.09Down
Larval carcass1 ± 00 of 4 0.04Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly26 ± 34 of 4

Looking for FBgn0259922. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime