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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259923 through 18771 annotations produced 1 hits



Septin 4 (Sep-04):

Annotation Number : CG9699
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259923
Gbrowse : chrX:16578243-16589206 (-) // 100.0 //
Probeset : 1630075_s_at
Accessions : protein= NP_573147; /// NP_728003; /// NP_728004; /// NP_728005; /// NP_728006; /// NP_728007; /// NP_996489;, nucleotide= NM_132919; /// NM_167530; /// NM_167531; /// NM_167532; /// NM_167533; /// NM_167534; /// NM_206766;
Pathway : 0005940 // septin ring // inferred from sequence or structural similarity /// 0031105 // septin complex // inferred from
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // non-traceable aut
FlyMine data for FBgn0259923.
Homophila reports that CG9699 is a close match (5e-75) to human gene MSF;MSF1;NAPB;SEPT9 (NP_006631), a gene associated with Amyotrophy, hereditary neuralgic, 162100 (3);Leukemia, acute myeloid, therapy-related (1);Ovarian carcinoma (1).
TRiP has 2 RNAi stocks for FBgn0259923 available for purchase.
VDRC has 2 RNAi stocks for FBgn0259923 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1009 204 of 4 7.80Up
Head272 274 of 4 2.10Up
Eye62 34 of 4 0.49Down
Thoracicoabdominal ganglion618 184 of 4 4.80Up
Salivary gland41 24 of 4 0.33Down
Crop61 64 of 4 0.50Down
Midgut139 64 of 4 1.10None
Tubule124 64 of 4 1.00None
Hindgut69 24 of 4 0.50Down
Heart114 124 of 4 0.89None
Fat body35 54 of 4 0.27Down
Ovary281 214 of 4 2.20Up
Testis5 03 of 4 0.00Down
Male accessory glands187 84 of 4 1.50Up
Virgin spermatheca44 44 of 4 0.34Down
Mated spermatheca23 24 of 4 0.18Down
Adult carcass49 64 of 4 0.40Down
Larval CNS496 904 of 4 3.85Up
Larval Salivary gland6 10 of 4 0.05Down
Larval midgut117 134 of 4 0.91None
Larval tubule614 554 of 4 4.80Up
Larval hindgut38 24 of 4 0.29Down
Larval fat body31 64 of 4 0.20Down
Larval trachea3 20 of 4 0.03Down
Larval carcass20 44 of 4 0.16Down
S2 cells (growing)18 24 of 4 0.15Down
Whole fly128 104 of 4

Looking for FBgn0259923. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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