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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259926 through 18771 annotations produced 1 hits



CG15778 (CG42449):

Annotation Number : CG15778
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259926
Gbrowse : chrX:5577293-5578297 (+) // 100.0 //
Probeset : 1636936_at
Accessions : protein= NP_001162677; /// NP_572244;, nucleotide= NM_001169206; /// NM_132016;
FlyMine data for FBgn0259926.
BioGrid reports that CG15778 interacts with CG7697 .
VDRC has 2 RNAi stocks for FBgn0259926 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 1.20None
Head2 ± 10 of 4 0.70None
Eye0 ± 00 of 4 0.17None
Thoracicoabdominal ganglion4 ± 10 of 4 1.30None
Salivary gland3 ± 20 of 4 1.21None
Crop6 ± 10 of 4 2.10None
Midgut7 ± 10 of 4 2.50None
Tubule5 ± 00 of 4 1.80Up
Hindgut4 ± 11 of 4 1.60None
Heart4 ± 21 of 4 1.53None
Fat body8 ± 60 of 4 2.63None
Ovary3 ± 00 of 4 1.00None
Testis2 ± 00 of 4 0.90None
Male accessory glands7 ± 10 of 4 2.60None
Virgin spermatheca5 ± 11 of 4 1.85None
Mated spermatheca1 ± 00 of 4 0.63None
Adult carcass5 ± 20 of 4 1.80None
Larval CNS1 ± 00 of 4 0.41None
Larval Salivary gland4 ± 10 of 4 1.43None
Larval midgut8 ± 10 of 4 2.71Up
Larval tubule4 ± 10 of 4 1.40None
Larval hindgut4 ± 10 of 4 1.58None
Larval fat body12 ± 21 of 4 4.10Up
Larval trachea3 ± 30 of 4 1.18None
Larval carcass8 ± 10 of 4 2.65None
S2 cells (growing)3 ± 00 of 4 1.10None
Whole fly3 ± 10 of 4

Looking for FBgn0259926. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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