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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259927 through 18771 annotations produced 2 hits



CG32543 (CG42450):

Annotation Number : CG7095
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259927
Gbrowse : chrX:18714697-18717122 (+) // 100.0 //
Probeset : 1634812_at
Accessions : protein= NP_573328;, nucleotide= NM_133100;
Pathway : 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferr
FlyMine data for FBgn0259927.
Homophila reports that CG7095 is a close match (2e-99) to human gene RGS9;PERRS (NP_001075424), a gene associated with Bradyopsia, 608415 (3).
BioGrid reports that CG7095 interacts with CG7824 .
VDRC has 2 RNAi stocks for FBgn0259927 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 30 of 4 3.90None
Head0 ± 00 of 4 0.40None
Eye0 ± 00 of 4 0.36None
Thoracicoabdominal ganglion5 ± 40 of 4 2.90None
Salivary gland2 ± 00 of 4 1.13None
Crop4 ± 10 of 4 2.40None
Midgut1 ± 10 of 4 1.00None
Tubule1 ± 00 of 4 0.70None
Hindgut3 ± 10 of 4 1.70None
Heart1 ± 00 of 4 0.60None
Fat body0 ± 00 of 4 0.31None
Ovary0 ± 00 of 4 0.30None
Testis1 ± 00 of 4 0.70None
Male accessory glands1 ± 00 of 4 0.80None
Virgin spermatheca1 ± 00 of 4 0.63None
Mated spermatheca1 ± 00 of 4 0.75None
Adult carcass1 ± 00 of 4 0.70None
Larval CNS1 ± 00 of 4 0.53None
Larval Salivary gland2 ± 10 of 4 1.04None
Larval midgut5 ± 10 of 4 2.54None
Larval tubule2 ± 00 of 4 1.30None
Larval hindgut1 ± 00 of 4 0.55None
Larval fat body2 ± 10 of 4 1.50None
Larval trachea0 ± 00 of 4 0.26None
Larval carcass0 ± 00 of 4 0.45None
S2 cells (growing)0 ± 00 of 4 0.42None
Whole fly2 ± 00 of 4



CG32543 (CG42450):

Annotation Number : CG32543
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259927
Gbrowse : chrX:18718304-18720486 (+) // 100.0 //
Probeset : 1631796_at
Accessions : protein= NP_573328;, nucleotide= NM_133100;
Pathway : 0005834 // heterotrimeric G-protein complex // inferred from electronic annotation
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferr
FlyMine data for FBgn0259927.
VDRC has 2 RNAi stocks for FBgn0259927 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 ± 04 of 424.70Up
Head2 ± 00 of 4 1.30None
Eye10 ± 20 of 4 6.32Up
Thoracicoabdominal ganglion34 ± 60 of 420.80Up
Salivary gland4 ± 10 of 4 2.55None
Crop18 ± 20 of 411.40Up
Midgut1 ± 00 of 4 0.70None
Tubule1 ± 00 of 4 0.60Down
Hindgut2 ± 00 of 4 1.50None
Heart11 ± 22 of 4 7.23Up
Fat body1 ± 00 of 4 1.05None
Ovary0 ± 00 of 4 0.50None
Testis8 ± 11 of 4 4.90Up
Male accessory glands4 ± 20 of 4 2.60None
Virgin spermatheca1 ± 00 of 4 0.73None
Mated spermatheca0 ± 00 of 4 0.41Down
Adult carcass1 ± 00 of 4 0.80None
Larval CNS8 ± 20 of 4 5.18Up
Larval Salivary gland1 ± 00 of 4 1.14None
Larval midgut1 ± 00 of 4 0.89None
Larval tubule1 ± 00 of 4 0.90None
Larval hindgut10 ± 10 of 4 6.32Up
Larval fat body2 ± 00 of 4 1.30None
Larval trachea2 ± 10 of 4 1.30None
Larval carcass2 ± 00 of 4 1.24None
S2 cells (growing)27 ± 20 of 416.42Up
Whole fly1 ± 00 of 4

Looking for FBgn0259927. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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