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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259933 through 18771 annotations produced 1 hits



/// (CG12016 /// CG42456):

Annotation Number : CG12016
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035436 /// FBgn0259933
Gbrowse : chr3L:3319556-3322491 (+) // 100.0 //
Probeset : 1636920_s_at
Accessions : protein= NP_001163338; /// NP_647805; /// NP_728865;, nucleotide= NM_001169867; /// NM_139548; /// NM_168022;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0035436 /// FBgn0259933.
BioGrid reports that CG12016 interacts with CG3744 CG6413 CG33518 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain475 144 of 4 1.50Up
Head718 834 of 4 2.20Up
Eye481 244 of 4 1.48Up
Thoracicoabdominal ganglion537 54 of 4 1.60Up
Salivary gland399 124 of 4 1.22Up
Crop785 154 of 4 2.40Up
Midgut187 24 of 4 0.60Down
Tubule181 84 of 4 0.60Down
Hindgut379 114 of 4 1.20Up
Heart723 454 of 4 2.22Up
Fat body1239 534 of 4 3.80Up
Ovary477 54 of 4 1.50Up
Testis72 54 of 4 0.20Down
Male accessory glands278 124 of 4 0.90None
Virgin spermatheca2123 914 of 4 6.51Up
Mated spermatheca1201 794 of 4 3.68Up
Adult carcass634 464 of 4 1.90Up
Larval CNS397 234 of 4 1.22Up
Larval Salivary gland245 114 of 4 0.75Down
Larval midgut126 74 of 4 0.39Down
Larval tubule147 44 of 4 0.50Down
Larval hindgut234 104 of 4 0.72Down
Larval fat body1618 2724 of 4 5.00Up
Larval trachea196 154 of 4 0.60Down
Larval carcass120 44 of 4 0.37Down
S2 cells (growing)206 54 of 4 0.63Down
Whole fly326 164 of 4

Looking for FBgn0259933. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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