FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259937 through 18771 annotations produced 2 hits

minifly (Nop60B):

Annotation Number : S.C2R002789
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259937
Gbrowse : chr2R:20072528-20073835 (+) // 100.0 //
Probeset : 1628188_at
Accessions : protein= NP_001014547; /// NP_001163286; /// NP_001163287; /// NP_001163288; /// NP_001163289; /// NP_525120;, nucleotide= NM_001014547; /// NM_001169815; /// NM_001169816; /// NM_001169817; /// NM_001169818; /// NM_080381;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0004730 // pseudouridylate synthase activity // inferr
FlyMine data for FBgn0259937.
TRiP has 1 RNAi stocks for FBgn0259937 available for purchase.
VDRC has 5 RNAi stocks for FBgn0259937 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	21 ± 0	4 of 4	0.10	Down
Head	29 ± 1	4 of 4	0.20	Down
Eye	22 ± 0	4 of 4	0.11	Down
Thoracicoabdominal ganglion	19 ± 2	4 of 4	0.10	Down
Salivary gland	44 ± 5	4 of 4	0.23	Down
Crop	26 ± 2	4 of 4	0.10	Down
Midgut	42 ± 5	4 of 4	0.20	Down
Tubule	58 ± 15	4 of 4	0.30	Down
Hindgut	25 ± 2	4 of 4	0.10	Down
Heart	27 ± 2	4 of 4	0.14	Down
Fat body	71 ± 23	4 of 4	0.36	Down
Ovary	458 ± 21	4 of 4	2.30	Up
Testis	16 ± 1	4 of 4	0.10	Down
Male accessory glands	83 ± 1	4 of 4	0.40	Down
Virgin spermatheca	106 ± 5	4 of 4	0.54	Down
Mated spermatheca	135 ± 5	4 of 4	0.69	None
Adult carcass	30 ± 4	4 of 4	0.20	Down
Larval CNS	212 ± 34	4 of 4	1.08	None
Larval Salivary gland	115 ± 14	4 of 4	0.59	Down
Larval midgut	45 ± 5	4 of 4	0.23	Down
Larval tubule	16 ± 0	4 of 4	0.10	Down
Larval hindgut	57 ± 12	4 of 4	0.29	Down
Larval fat body	29 ± 1	4 of 4	0.10	Down
Larval trachea	129 ± 30	4 of 4	0.66	None
Larval carcass	96 ± 35	4 of 4	0.49	None
S2 cells (growing)	126 ± 5	4 of 4	0.64	None
Whole fly	196 ± 24	4 of 4

minifly (Nop60B):

Annotation Number : CG3333
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259937
Gbrowse : chr2R:20062247-20064653 (+) // 100.0 //
Probeset : 1639554_at
Accessions : protein= NP_001014547; /// NP_001163286; /// NP_001163287; /// NP_001163288; /// NP_001163289; /// NP_525120;, nucleotide= NM_001014547; /// NM_001169815; /// NM_001169816; /// NM_001169817; /// NM_001169818; /// NM_080381;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0004730 // pseudouridylate synthase activity // inferr
FlyMine data for FBgn0259937.
Homophila reports that CG3333 is a close match (2e-176) to human gene DKC;DKC1 (NP_001354), a gene associated with Dyskeratosis congenita-1, 305000 (3);Hoyeraal-Hreidarsson syndrome, 300240 (3).
BioGrid reports that CG3333 interacts with CG7025 .
TRiP has 1 RNAi stocks for FBgn0259937 available for purchase.
VDRC has 5 RNAi stocks for FBgn0259937 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	45 ± 3	4 of 4	0.10	Down
Head	74 ± 7	4 of 4	0.10	Down
Eye	100 ± 14	4 of 4	0.19	Down
Thoracicoabdominal ganglion	55 ± 1	4 of 4	0.10	Down
Salivary gland	93 ± 4	4 of 4	0.17	Down
Crop	81 ± 4	4 of 4	0.20	Down
Midgut	119 ± 14	4 of 4	0.20	Down
Tubule	175 ± 45	4 of 4	0.30	Down
Hindgut	69 ± 2	4 of 4	0.10	Down
Heart	218 ± 17	4 of 4	0.41	Down
Fat body	155 ± 26	4 of 4	0.29	Down
Ovary	1070 ± 22	4 of 4	2.00	Up
Testis	43 ± 2	4 of 4	0.10	Down
Male accessory glands	309 ± 14	4 of 4	0.60	Down
Virgin spermatheca	161 ± 9	4 of 4	0.30	Down
Mated spermatheca	240 ± 8	4 of 4	0.45	Down
Adult carcass	103 ± 5	4 of 4	0.20	Down
Larval CNS	436 ± 9	4 of 4	0.82	None
Larval Salivary gland	320 ± 43	4 of 4	0.60	Down
Larval midgut	101 ± 12	4 of 4	0.19	Down
Larval tubule	38 ± 1	4 of 4	0.10	Down
Larval hindgut	193 ± 37	4 of 4	0.36	Down
Larval fat body	36 ± 4	4 of 4	0.10	Down
Larval trachea	834 ± 147	4 of 4	1.56	Up
Larval carcass	299 ± 85	4 of 4	0.56	None
S2 cells (growing)	443 ± 14	4 of 4	0.83	None
Whole fly	534 ± 53	4 of 4

Looking for FBgn0259937. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720