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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259938 through 18771 annotations produced 1 hits



clockwork orange (cwo):

Annotation Number : CG17100
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259938
Gbrowse : chr3R:6213984-6226072 (+) // 100.0 //
Probeset : 1623277_at
Accessions : protein= NP_524775;, nucleotide= NM_080036;
Pathway : DNA-dependent // inferred from electronic annotation /// 0042752 // regulation of circadian rhythm // inferred from mut
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
FlyMine data for FBgn0259938.
TRiP has 3 RNAi stocks for FBgn0259938 available for purchase.
VDRC has 3 RNAi stocks for FBgn0259938 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain193 ± 84 of 4 1.20None
Head232 ± 64 of 4 1.40Up
Eye303 ± 1054 of 4 1.86None
Thoracicoabdominal ganglion189 ± 134 of 4 1.20None
Salivary gland288 ± 244 of 4 1.77Up
Crop296 ± 64 of 4 1.80Up
Midgut184 ± 44 of 4 1.10None
Tubule341 ± 394 of 4 2.10Up
Hindgut302 ± 84 of 4 1.90Up
Heart573 ± 244 of 4 3.52Up
Fat body558 ± 1224 of 4 3.43Up
Ovary215 ± 24 of 4 1.30Up
Testis33 ± 24 of 4 0.20Down
Male accessory glands285 ± 174 of 4 1.70Up
Virgin spermatheca440 ± 264 of 4 2.70Up
Mated spermatheca425 ± 94 of 4 2.61Up
Adult carcass314 ± 334 of 4 1.90Up
Larval CNS156 ± 154 of 4 0.96None
Larval Salivary gland293 ± 94 of 4 1.80Up
Larval midgut197 ± 104 of 4 1.21None
Larval tubule303 ± 84 of 4 1.90Up
Larval hindgut311 ± 264 of 4 1.91Up
Larval fat body397 ± 144 of 4 2.40Up
Larval trachea473 ± 694 of 4 2.91Up
Larval carcass136 ± 24 of 4 0.84None
S2 cells (growing)499 ± 264 of 4 3.06Up
Whole fly162 ± 154 of 4

Looking for FBgn0259938. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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