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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259977 through 18771 annotations produced 1 hits



Tyrosine decarboxylase 1 (Tdc1):

Annotation Number : CG30445
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259977
Gbrowse : chr2R:2564500-2567891 (-) // 100.0 //
Probeset : 1635665_at
Accessions : protein= NP_610226;, nucleotide= NM_136382;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004058 // aromatic-L-amino-acid decarboxylase
FlyMine data for FBgn0259977.
Homophila reports that CG30445 is a close match (3e-24) to human gene GAD1;SCP (NP_000808), a gene associated with Cerebral palsy, spastic, symmetric, autosomal recessive, 603513 (3).
TRiP has 1 RNAi stocks for FBgn0259977 available for purchase.
VDRC has 2 RNAi stocks for FBgn0259977 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head106 ± 74 of 4 2.10Up
Eye6 ± 01 of 4 0.13Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland10 ± 10 of 4 0.21Down
Crop1055 ± 304 of 420.80Up
Midgut120 ± 24 of 4 2.40Up
Tubule292 ± 204 of 4 5.80Up
Hindgut916 ± 304 of 418.10Up
Heart41 ± 54 of 4 0.82None
Fat body5 ± 30 of 4 0.11Down
Ovary15 ± 11 of 4 0.30Down
Testis32 ± 24 of 4 0.60None
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca2 ± 00 of 4 0.05Down
Mated spermatheca5 ± 10 of 4 0.11Down
Adult carcass27 ± 72 of 4 0.50None
Larval CNS4 ± 30 of 4 0.09Down
Larval Salivary gland5 ± 10 of 4 0.11Down
Larval midgut99 ± 34 of 4 1.96Up
Larval tubule354 ± 174 of 4 7.00Up
Larval hindgut621 ± 174 of 412.24Up
Larval fat body8 ± 30 of 4 0.20Down
Larval trachea171 ± 354 of 4 3.37Up
Larval carcass78 ± 104 of 4 1.55None
S2 cells (growing)66 ± 24 of 4 1.31None
Whole fly50 ± 74 of 4

Looking for FBgn0259977. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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