FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259978 through 18771 annotations produced 1 hits

vulcan (vlc):

Annotation Number : CG8390
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259978
Gbrowse : chr2R:1589611-1592947 (+) // 100.0 //
Probeset : 1639759_s_at
Accessions : protein= NP_001163056; /// NP_001163057; /// NP_524868; /// NP_724425; /// NP_724426; /// NP_724427;, nucleotide= NM_001169585; /// NM_001169586; /// NM_080129; /// NM_165442; /// NM_165443; /// NM_165444;
Pathway : 0005918 // septate junction // inferred from sequence or structural similarity
FlyMine data for FBgn0259978.
BioGrid reports that CG8390 interacts with CG9977 .
TRiP has 1 RNAi stocks for FBgn0259978 available for purchase.
VDRC has 2 RNAi stocks for FBgn0259978 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	316 ± 8	4 of 4	0.80	Down
Head	168 ± 15	4 of 4	0.40	Down
Eye	97 ± 2	4 of 4	0.23	Down
Thoracicoabdominal ganglion	250 ± 1	4 of 4	0.60	Down
Salivary gland	140 ± 6	4 of 4	0.33	Down
Crop	206 ± 7	4 of 4	0.50	Down
Midgut	91 ± 6	4 of 4	0.20	Down
Tubule	93 ± 3	4 of 4	0.20	Down
Hindgut	136 ± 3	4 of 4	0.30	Down
Heart	110 ± 4	4 of 4	0.26	Down
Fat body	263 ± 14	4 of 4	0.63	Down
Ovary	854 ± 16	4 of 4	2.00	Up
Testis	816 ± 33	4 of 4	1.90	Up
Male accessory glands	203 ± 12	4 of 4	0.50	Down
Virgin spermatheca	226 ± 21	4 of 4	0.54	Down
Mated spermatheca	175 ± 12	4 of 4	0.42	Down
Adult carcass	124 ± 10	4 of 4	0.30	Down
Larval CNS	432 ± 45	4 of 4	1.03	None
Larval Salivary gland	306 ± 21	4 of 4	0.73	Down
Larval midgut	100 ± 10	4 of 4	0.24	Down
Larval tubule	172 ± 2	4 of 4	0.40	Down
Larval hindgut	276 ± 10	4 of 4	0.66	Down
Larval fat body	161 ± 22	4 of 4	0.40	Down
Larval trachea	234 ± 5	4 of 4	0.56	Down
Larval carcass	322 ± 9	4 of 4	0.77	Down
S2 cells (growing)	444 ± 19	4 of 4	1.05	None
Whole fly	421 ± 24	4 of 4

Looking for FBgn0259978. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720