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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259985 through 18771 annotations produced 1 hits



(CG8889):

Annotation Number : CG8889
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259985
Gbrowse : chr2R:7913085-7915193 (-) // 100.0 //
Probeset : 1638001_a_at
Accessions : protein= NP_612572; /// NP_725099; /// NP_995820;, nucleotide= NM_138562; /// NM_165861; /// NM_206098;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0259985.
BioGrid reports that CG8889 interacts with CG8739 .
VDRC has 1 RNAi stocks for FBgn0259985 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain130 34 of 4 0.80Down
Head1090 634 of 4 6.60Up
Eye3976 1364 of 424.11Up
Thoracicoabdominal ganglion80 34 of 4 0.50Down
Salivary gland152 124 of 4 0.92None
Crop109 114 of 4 0.70Down
Midgut19 32 of 4 0.10Down
Tubule27 14 of 4 0.20Down
Hindgut58 44 of 4 0.40Down
Heart62 14 of 4 0.38Down
Fat body39 54 of 4 0.24Down
Ovary178 24 of 4 1.10None
Testis91 54 of 4 0.60Down
Male accessory glands108 34 of 4 0.70Down
Virgin spermatheca40 24 of 4 0.24Down
Mated spermatheca50 34 of 4 0.31Down
Adult carcass49 44 of 4 0.30Down
Larval CNS90 114 of 4 0.55Down
Larval Salivary gland148 164 of 4 0.90None
Larval midgut17 20 of 4 0.10Down
Larval tubule11 21 of 4 0.10Down
Larval hindgut47 44 of 4 0.29Down
Larval fat body44 44 of 4 0.30Down
Larval trachea135 1394 of 4 0.82None
Larval carcass47 24 of 4 0.29Down
S2 cells (growing)71 24 of 4 0.43Down
Whole fly164 104 of 4

Looking for FBgn0259985. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime