FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259986 through 18771 annotations produced 2 hits

lethal (3) SH143 (nab):

Annotation Number : CG15001
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259986
Gbrowse : chr3L:4160322-4160649 (-) // 100.0 //
Probeset : 1633006_at
Accessions : protein= NP_001014557; /// NP_001163344;, nucleotide= NM_001014557; /// NM_001169873;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0048666 // neuron development // inferred from mut
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0259986.
VDRC has 5 RNAi stocks for FBgn0259986 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.80	None
Head	4 ± 1	0 of 4	1.40	None
Eye	6 ± 0	0 of 4	2.31	None
Thoracicoabdominal ganglion	4 ± 1	0 of 4	1.40	None
Salivary gland	7 ± 2	0 of 4	2.79	None
Crop	0 ± 0	0 of 4	0.20	None
Midgut	2 ± 1	0 of 4	0.90	None
Tubule	1 ± 0	0 of 4	0.70	Down
Hindgut	3 ± 1	0 of 4	1.20	None
Heart	3 ± 0	0 of 4	1.35	None
Fat body	3 ± 2	0 of 4	1.32	None
Ovary	1 ± 0	0 of 4	0.70	None
Testis	0 ± 0	0 of 4	0.20	None
Male accessory glands	1 ± 0	0 of 4	0.50	None
Virgin spermatheca	0 ± 0	0 of 4	0.21	None
Mated spermatheca	1 ± 0	0 of 4	0.38	None
Adult carcass	3 ± 0	0 of 4	1.10	None
Larval CNS	14 ± 4	4 of 4	5.02	Up
Larval Salivary gland	1 ± 0	0 of 4	0.49	None
Larval midgut	3 ± 1	0 of 4	1.19	None
Larval tubule	0 ± 0	0 of 4	0.30	None
Larval hindgut	2 ± 0	0 of 4	0.97	None
Larval fat body	1 ± 0	0 of 4	0.50	None
Larval trachea	2 ± 1	0 of 4	1.01	None
Larval carcass	2 ± 1	0 of 4	0.76	None
S2 cells (growing)	0 ± 0	0 of 4	0.30	None
Whole fly	2 ± 1	0 of 4

lethal (3) SH143 (nab):

Annotation Number : CG15000
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259986
Gbrowse : chr3L:4153841-4156496 (-) // 100.0 //
Probeset : 1637139_at
Accessions : protein= NP_001014557; /// NP_001163344;, nucleotide= NM_001014557; /// NM_001169873;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0048666 // neuron development // inferred from mut
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0259986.
VDRC has 5 RNAi stocks for FBgn0259986 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.60	None
Head	0 ± 0	0 of 4	1.20	None
Eye	0 ± 0	0 of 4	0.88	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	1.40	None
Salivary gland	2 ± 0	0 of 4	3.52	Up
Crop	1 ± 0	0 of 4	1.70	Up
Midgut	0 ± 0	0 of 4	1.20	None
Tubule	0 ± 0	0 of 4	1.30	Up
Hindgut	0 ± 0	0 of 4	1.30	None
Heart	0 ± 0	0 of 4	0.68	None
Fat body	1 ± 0	0 of 4	2.08	None
Ovary	0 ± 0	0 of 4	0.90	None
Testis	0 ± 0	0 of 4	1.20	None
Male accessory glands	0 ± 0	0 of 4	1.40	None
Virgin spermatheca	1 ± 0	0 of 4	1.96	Up
Mated spermatheca	0 ± 0	0 of 4	1.44	Up
Adult carcass	1 ± 0	0 of 4	2.20	Up
Larval CNS	121 ± 19	4 of 4	194.44	Up
Larval Salivary gland	0 ± 0	0 of 4	1.20	None
Larval midgut	1 ± 0	0 of 4	1.80	Up
Larval tubule	0 ± 0	0 of 4	1.00	None
Larval hindgut	0 ± 0	0 of 4	1.48	Up
Larval fat body	1 ± 0	0 of 4	2.10	Up
Larval trachea	0 ± 0	0 of 4	0.76	None
Larval carcass	1 ± 0	0 of 4	1.96	Up
S2 cells (growing)	0 ± 0	0 of 4	1.12	None
Whole fly	0 ± 0	0 of 4

Looking for FBgn0259986. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720