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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259986 through 18771 annotations produced 2 hits



lethal (3) SH143 (nab):

Annotation Number : CG15001
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259986
Gbrowse : chr3L:4160322-4160649 (-) // 100.0 //
Probeset : 1633006_at
Accessions : protein= NP_001014557; /// NP_001163344;, nucleotide= NM_001014557; /// NM_001169873;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0048666 // neuron development // inferred from mut
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0259986.
VDRC has 5 RNAi stocks for FBgn0259986 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.80None
Head4 10 of 4 1.40None
Eye6 00 of 4 2.31None
Thoracicoabdominal ganglion4 10 of 4 1.40None
Salivary gland7 20 of 4 2.79None
Crop0 00 of 4 0.20None
Midgut2 10 of 4 0.90None
Tubule1 00 of 4 0.70Down
Hindgut3 10 of 4 1.20None
Heart3 00 of 4 1.35None
Fat body3 20 of 4 1.32None
Ovary1 00 of 4 0.70None
Testis0 00 of 4 0.20None
Male accessory glands1 00 of 4 0.50None
Virgin spermatheca0 00 of 4 0.21None
Mated spermatheca1 00 of 4 0.38None
Adult carcass3 00 of 4 1.10None
Larval CNS14 44 of 4 5.02Up
Larval Salivary gland1 00 of 4 0.49None
Larval midgut3 10 of 4 1.19None
Larval tubule0 00 of 4 0.30None
Larval hindgut2 00 of 4 0.97None
Larval fat body1 00 of 4 0.50None
Larval trachea2 10 of 4 1.01None
Larval carcass2 10 of 4 0.76None
S2 cells (growing)0 00 of 4 0.30None
Whole fly2 10 of 4



lethal (3) SH143 (nab):

Annotation Number : CG15000
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259986
Gbrowse : chr3L:4153841-4156496 (-) // 100.0 //
Probeset : 1637139_at
Accessions : protein= NP_001014557; /// NP_001163344;, nucleotide= NM_001014557; /// NM_001169873;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0048666 // neuron development // inferred from mut
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0259986.
VDRC has 5 RNAi stocks for FBgn0259986 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.60None
Head0 00 of 4 1.20None
Eye0 00 of 4 0.88None
Thoracicoabdominal ganglion0 00 of 4 1.40None
Salivary gland2 00 of 4 3.52Up
Crop1 00 of 4 1.70Up
Midgut0 00 of 4 1.20None
Tubule0 00 of 4 1.30Up
Hindgut0 00 of 4 1.30None
Heart0 00 of 4 0.68None
Fat body1 00 of 4 2.08None
Ovary0 00 of 4 0.90None
Testis0 00 of 4 1.20None
Male accessory glands0 00 of 4 1.40None
Virgin spermatheca1 00 of 4 1.96Up
Mated spermatheca0 00 of 4 1.44Up
Adult carcass1 00 of 4 2.20Up
Larval CNS121 194 of 4194.44Up
Larval Salivary gland0 00 of 4 1.20None
Larval midgut1 00 of 4 1.80Up
Larval tubule0 00 of 4 1.00None
Larval hindgut0 00 of 4 1.48Up
Larval fat body1 00 of 4 2.10Up
Larval trachea0 00 of 4 0.76None
Larval carcass1 00 of 4 1.96Up
S2 cells (growing)0 00 of 4 1.12None
Whole fly0 00 of 4

Looking for FBgn0259986. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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