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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259993 through 18771 annotations produced 1 hits



PARP-binding protein-12 (RpL22):

Annotation Number : CG7434
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015288 /// FBgn0259993
Gbrowse : chrX:656588-659172 (-) // 100.0 //
Probeset : 1639312_at
Accessions : protein= NP_477134;, nucleotide= NM_057786;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0015288 /// FBgn0259993.
BioGrid reports that CG7434 interacts with CG7434 CG7570 CG9004 CG9040 CG9465 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3339 464 of 4 0.90None
Head4604 1774 of 4 1.20Up
Eye6899 244 of 4 1.76Up
Thoracicoabdominal ganglion4888 1804 of 4 1.20Up
Salivary gland8326 1754 of 4 2.12Up
Crop5812 3054 of 4 1.50Up
Midgut4903 764 of 4 1.30Up
Tubule5319 454 of 4 1.40Up
Hindgut4878 824 of 4 1.20Up
Heart6242 4524 of 4 1.59Up
Fat body5711 6474 of 4 1.46Up
Ovary3268 554 of 4 0.80Down
Testis684 304 of 4 0.20Down
Male accessory glands9500 3244 of 4 2.40Up
Virgin spermatheca6093 1804 of 4 1.55Up
Mated spermatheca6279 1654 of 4 1.60Up
Adult carcass5479 3164 of 4 1.40Up
Larval CNS2853 2444 of 4 0.73Down
Larval Salivary gland7032 3064 of 4 1.79Up
Larval midgut4483 934 of 4 1.14Up
Larval tubule4674 664 of 4 1.20Up
Larval hindgut4764 534 of 4 1.22Up
Larval fat body6589 7194 of 4 1.70Up
Larval trachea6274 3194 of 4 1.60Up
Larval carcass4716 3344 of 4 1.20None
S2 cells (growing)4366 204 of 4 1.11None
Whole fly3919 1854 of 4

Looking for FBgn0259993. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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