FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0259994 through 18771 annotations produced 2 hits

CG11473 (CG42492):

Annotation Number : CG11473
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259994
Gbrowse : chrX:5521696-5531623 (-) // 99.74 //
Probeset : 1631554_at
Accessions : protein= NP_001162676; /// NP_572237; /// NP_652522;, nucleotide= NM_001169205; /// NM_132009; /// NM_132009; /// NM_144265; /// NM_144265;
FlyMine data for FBgn0259994.
VDRC has 2 RNAi stocks for FBgn0259994 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1410 ± 24	4 of 4	58.10	Up
Head	154 ± 14	4 of 4	6.40	Up
Eye	225 ± 20	4 of 4	9.31	Up
Thoracicoabdominal ganglion	921 ± 34	4 of 4	38.00	Up
Salivary gland	18 ± 3	1 of 4	0.75	None
Crop	5 ± 0	0 of 4	0.20	Down
Midgut	2 ± 1	0 of 4	0.10	Down
Tubule	4 ± 0	0 of 4	0.20	Down
Hindgut	16 ± 2	4 of 4	0.70	Down
Heart	7 ± 1	2 of 4	0.30	Down
Fat body	23 ± 9	4 of 4	0.97	None
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	2 ± 0	0 of 4	0.10	Down
Male accessory glands	3 ± 1	0 of 4	0.10	Down
Virgin spermatheca	23 ± 2	4 of 4	0.95	None
Mated spermatheca	25 ± 5	3 of 4	1.07	None
Adult carcass	9 ± 1	0 of 4	0.40	Down
Larval CNS	1097 ± 120	4 of 4	45.28	Up
Larval Salivary gland	3 ± 2	0 of 4	0.13	Down
Larval midgut	2 ± 0	0 of 4	0.10	Down
Larval tubule	4 ± 1	0 of 4	0.20	Down
Larval hindgut	2 ± 0	0 of 4	0.10	Down
Larval fat body	4 ± 2	0 of 4	0.20	Down
Larval trachea	5 ± 2	2 of 4	0.21	Down
Larval carcass	1 ± 0	0 of 4	0.05	Down
S2 cells (growing)	0 ± 0	0 of 4	0.01	Down
Whole fly	24 ± 1	4 of 4

CG11473 (CG42492):

Annotation Number : CG17761
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259994
Gbrowse : chrX:5535921-5537098 (-) // 100.0 //
Probeset : 1627652_at
Accessions : protein= NP_001162676; /// NP_572237; /// NP_652522;, nucleotide= NM_001169205; /// NM_132009; /// NM_132009; /// NM_144265; /// NM_144265;
FlyMine data for FBgn0259994.
VDRC has 2 RNAi stocks for FBgn0259994 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	78 ± 3	4 of 4	23.50	Up
Head	14 ± 2	2 of 4	4.20	Up
Eye	43 ± 4	4 of 4	12.97	Up
Thoracicoabdominal ganglion	52 ± 5	4 of 4	15.60	Up
Salivary gland	4 ± 1	0 of 4	1.25	None
Crop	3 ± 1	0 of 4	1.00	None
Midgut	1 ± 0	0 of 4	0.40	None
Tubule	1 ± 0	0 of 4	0.50	Down
Hindgut	23 ± 1	4 of 4	6.90	Up
Heart	6 ± 1	1 of 4	1.85	None
Fat body	8 ± 3	0 of 4	2.57	Up
Ovary	2 ± 0	0 of 4	0.70	None
Testis	2 ± 1	0 of 4	0.90	None
Male accessory glands	3 ± 1	0 of 4	1.10	None
Virgin spermatheca	5 ± 1	0 of 4	1.64	None
Mated spermatheca	11 ± 3	1 of 4	3.39	None
Adult carcass	2 ± 0	0 of 4	0.70	None
Larval CNS	34 ± 2	4 of 4	10.37	Up
Larval Salivary gland	1 ± 0	0 of 4	0.44	None
Larval midgut	1 ± 0	0 of 4	0.46	None
Larval tubule	2 ± 0	0 of 4	0.70	None
Larval hindgut	3 ± 1	0 of 4	1.12	None
Larval fat body	2 ± 1	0 of 4	0.80	None
Larval trachea	1 ± 0	0 of 4	0.42	None
Larval carcass	3 ± 1	0 of 4	0.94	None
S2 cells (growing)	2 ± 0	0 of 4	0.68	None
Whole fly	3 ± 1	0 of 4

Looking for FBgn0259994. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720