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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259996 through 18771 annotations produced 2 hits



anon-38C.21 (CG40341):

Annotation Number : S.C2L002524
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259996
Gbrowse : chr2L:20248222-20249534 (+) // 100.0 //
Probeset : 1637655_s_at
Accessions : protein= NP_001033923;, nucleotide= NM_001038834;
FlyMine data for FBgn0259996.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 1.50None
Head2 10 of 4 7.70None
Eye0 00 of 4 1.33None
Thoracicoabdominal ganglion0 00 of 4 1.20None
Salivary gland3 10 of 4 8.33None
Crop0 00 of 4 1.90None
Midgut0 00 of 4 1.10None
Tubule0 00 of 4 1.80None
Hindgut0 00 of 4 2.50None
Heart0 00 of 4 0.60None
Fat body0 00 of 4 0.80None
Ovary0 00 of 4 0.50None
Testis0 00 of 4 1.30None
Male accessory glands2 20 of 4 7.70None
Virgin spermatheca0 00 of 4 0.80None
Mated spermatheca0 00 of 4 0.80None
Adult carcass1 00 of 4 3.60None
Larval CNS0 00 of 4 1.53None
Larval Salivary gland0 00 of 4 1.27None
Larval midgut0 00 of 4 1.20None
Larval tubule0 00 of 4 0.60None
Larval hindgut0 00 of 4 1.80None
Larval fat body2 10 of 4 6.80None
Larval trachea0 00 of 4 1.00None
Larval carcass0 00 of 4 1.07None
S2 cells (growing)0 00 of 4 0.73None
Whole fly0 00 of 4



anon-38C.21 (CG40341):

Annotation Number : CG40341
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259996
Gbrowse : chr2L:20248222-20253624 (+) // 100.0 //
Probeset : 1630179_at
Accessions : protein= NP_001033923;, nucleotide= NM_001038834;
FlyMine data for FBgn0259996.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 2.00None
Head2 00 of 4 1.40None
Eye1 00 of 4 1.26None
Thoracicoabdominal ganglion3 10 of 4 2.30None
Salivary gland4 20 of 4 2.73None
Crop2 00 of 4 1.60None
Midgut2 00 of 4 1.70None
Tubule2 00 of 4 1.40Up
Hindgut2 10 of 4 1.30None
Heart2 00 of 4 1.39None
Fat body4 10 of 4 2.94None
Ovary3 11 of 4 2.00None
Testis1 00 of 4 0.60None
Male accessory glands4 20 of 4 2.70None
Virgin spermatheca0 00 of 4 0.52None
Mated spermatheca2 10 of 4 1.69None
Adult carcass6 20 of 4 3.90None
Larval CNS1 10 of 4 1.24None
Larval Salivary gland4 10 of 4 2.60None
Larval midgut4 10 of 4 2.94None
Larval tubule1 00 of 4 1.00None
Larval hindgut2 00 of 4 1.32None
Larval fat body7 10 of 4 4.90Up
Larval trachea1 00 of 4 0.69None
Larval carcass5 10 of 4 3.32None
S2 cells (growing)2 00 of 4 1.32None
Whole fly1 10 of 4

Looking for FBgn0259996. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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