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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0259998 through 18771 annotations produced 1 hits



anon-38C.22 (CG17571):

Annotation Number : CT34147
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259998
Gbrowse : chr2L:20256119-20256930 (-) // 100.0 //
Probeset : 1635878_s_at
Accessions : protein= NP_610109;, nucleotide= NM_136265;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0259998.
VDRC has 5 RNAi stocks for FBgn0259998 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.00Down
Head6 ± 30 of 4 0.00Down
Eye13 ± 61 of 4 0.01Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.00Down
Salivary gland33 ± 70 of 4 0.03Down
Crop9 ± 20 of 4 0.00Down
Midgut5616 ± 1704 of 4 5.50Up
Tubule10 ± 10 of 4 0.00Down
Hindgut15 ± 40 of 4 0.00Down
Heart5 ± 20 of 4 0.01Down
Fat body10 ± 30 of 4 0.01Down
Ovary4 ± 00 of 4 0.00Down
Testis35 ± 04 of 4 0.00Down
Male accessory glands6 ± 10 of 4 0.00Down
Virgin spermatheca13 ± 60 of 4 0.01Down
Mated spermatheca23 ± 30 of 4 0.02Down
Adult carcass21 ± 60 of 4 0.00Down
Larval CNS13 ± 50 of 4 0.01Down
Larval Salivary gland9 ± 10 of 4 0.01Down
Larval midgut6742 ± 2724 of 4 6.66Up
Larval tubule11 ± 30 of 4 0.00Down
Larval hindgut20 ± 21 of 4 0.02Down
Larval fat body17 ± 20 of 4 0.00Down
Larval trachea9 ± 20 of 4 0.01Down
Larval carcass18 ± 50 of 4 0.02Down
S2 cells (growing)13 ± 00 of 4 0.01Down
Whole fly1013 ± 1544 of 4

Looking for FBgn0259998. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime