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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260000 through 18771 annotations produced 1 hits



anon-38C.24 (CG17570):

Annotation Number : CT34146
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260000
Gbrowse : chr2L:20263894-20264299 (-) // 100.0 //
Probeset : 1637253_s_at
Accessions : protein= NP_610110;, nucleotide= NM_136266;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0260000.
VDRC has 2 RNAi stocks for FBgn0260000 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.30None
Head5 ± 00 of 4 0.70None
Eye3 ± 10 of 4 0.49None
Thoracicoabdominal ganglion2 ± 10 of 4 0.40None
Salivary gland18 ± 60 of 4 2.64None
Crop4 ± 10 of 4 0.60None
Midgut75 ± 34 of 410.70Up
Tubule3 ± 00 of 4 0.50Down
Hindgut82 ± 44 of 411.70Up
Heart5 ± 21 of 4 0.83None
Fat body5 ± 20 of 4 0.80None
Ovary1 ± 00 of 4 0.10None
Testis2 ± 10 of 4 0.40None
Male accessory glands9 ± 21 of 4 1.30None
Virgin spermatheca3 ± 00 of 4 0.54None
Mated spermatheca4 ± 10 of 4 0.67None
Adult carcass6 ± 10 of 4 0.90None
Larval CNS2 ± 20 of 4 0.38None
Larval Salivary gland5 ± 10 of 4 0.79None
Larval midgut51 ± 84 of 4 7.32Up
Larval tubule16 ± 44 of 4 2.40None
Larval hindgut50 ± 84 of 4 7.20Up
Larval fat body2 ± 00 of 4 0.40None
Larval trachea5 ± 71 of 4 0.79None
Larval carcass2 ± 00 of 4 0.32None
S2 cells (growing)1 ± 10 of 4 0.24None
Whole fly7 ± 20 of 4

Looking for FBgn0260000. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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