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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260003 through 18771 annotations produced 5 hits



Dystrophin (Dys):

Annotation Number : HDC14493
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260003
Gbrowse : chr3R:15350346-15353295 (+) // 100.0 //
Probeset : 1631917_at
Accessions : protein= NP_001036721; /// NP_001036722; /// NP_001036723; /// NP_001036724; /// NP_001036725; /// NP_001036726; /// NP_001036727; /// NP_001036728;, nucleotide= NM_001043256; /// NM_001043257; /// NM_001043258; /// NM_001043259; /// NM_001043260; /// NM_001043261; /// NM_001043262; /// NM_001043263;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from sequence or str
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // inferred fro
FlyMine data for FBgn0260003.
TRiP has 1 RNAi stocks for FBgn0260003 available for purchase.
VDRC has 6 RNAi stocks for FBgn0260003 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 1.90None
Head0 00 of 4 0.70None
Eye2 10 of 4 2.23None
Thoracicoabdominal ganglion1 00 of 4 1.30None
Salivary gland1 00 of 4 1.42None
Crop3 10 of 4 3.30None
Midgut0 00 of 4 0.60None
Tubule1 00 of 4 1.30None
Hindgut0 00 of 4 0.40None
Heart0 00 of 4 0.33None
Fat body0 00 of 4 0.72None
Ovary0 00 of 4 0.30None
Testis1 00 of 4 1.10None
Male accessory glands0 00 of 4 0.60None
Virgin spermatheca0 00 of 4 0.35None
Mated spermatheca1 00 of 4 1.05None
Adult carcass1 00 of 4 1.30None
Larval CNS0 00 of 4 0.72None
Larval Salivary gland0 00 of 4 0.77None
Larval midgut0 00 of 4 0.67None
Larval tubule3 10 of 4 2.90None
Larval hindgut0 00 of 4 0.28None
Larval fat body1 10 of 4 1.70None
Larval trachea0 00 of 4 0.35None
Larval carcass0 00 of 4 0.49None
S2 cells (growing)0 00 of 4 0.72None
Whole fly1 00 of 4



Dystrophin (Dys):

Annotation Number : CG31175
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260003
Gbrowse : chr3R:15289254-15420453 (+) // 100.0 //
Probeset : 1625988_a_at
Accessions : protein= NP_001036721; /// NP_001036722; /// NP_001036723; /// NP_001036724; /// NP_001036725; /// NP_001036726; /// NP_001036727; /// NP_001036728;, nucleotide= NM_001043256; /// NM_001043257; /// NM_001043258; /// NM_001043259; /// NM_001043260; /// NM_001043261; /// NM_001043262; /// NM_001043263;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from sequence or str
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // inferred fro
FlyMine data for FBgn0260003.
BioGrid reports that CG31175 interacts with CG3263 CG33129 CG3509 CG3917 CG4621 CG4799 CG5005 CG5313 CG6506 CG6637 CG7281 CG8216 CG9083 CG9642 CG9769 .
TRiP has 1 RNAi stocks for FBgn0260003 available for purchase.
VDRC has 6 RNAi stocks for FBgn0260003 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 24 of 4 1.00None
Head67 64 of 4 1.20None
Eye55 34 of 4 0.96None
Thoracicoabdominal ganglion49 34 of 4 0.80None
Salivary gland123 84 of 4 2.11Up
Crop120 44 of 4 2.10Up
Midgut49 34 of 4 0.80None
Tubule57 34 of 4 1.00None
Hindgut150 14 of 4 2.60Up
Heart50 34 of 4 0.86None
Fat body39 64 of 4 0.67Down
Ovary62 14 of 4 1.10None
Testis40 24 of 4 0.70Down
Male accessory glands95 104 of 4 1.60Up
Virgin spermatheca39 14 of 4 0.67Down
Mated spermatheca49 84 of 4 0.84None
Adult carcass75 44 of 4 1.30Up
Larval CNS38 64 of 4 0.65Down
Larval Salivary gland177 144 of 4 3.04Up
Larval midgut44 24 of 4 0.76Down
Larval tubule213 54 of 4 3.70Up
Larval hindgut98 44 of 4 1.69Up
Larval fat body31 44 of 4 0.50Down
Larval trachea125 84 of 4 2.15Up
Larval carcass62 74 of 4 1.08None
S2 cells (growing)83 44 of 4 1.43Up
Whole fly58 44 of 4



Dystrophin (Dys):

Annotation Number : CG31175
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260003
Gbrowse : chr3R:15290503-15421117 (+) // 100.0 //
Probeset : 1640200_at
Accessions : protein= NP_001036721; /// NP_001036722; /// NP_001036723; /// NP_001036724; /// NP_001036725; /// NP_001036726; /// NP_001036727; /// NP_001036728;, nucleotide= NM_001043256; /// NM_001043257; /// NM_001043258; /// NM_001043259; /// NM_001043260; /// NM_001043261; /// NM_001043262; /// NM_001043263;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from sequence or str
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // inferred fro
FlyMine data for FBgn0260003.
BioGrid reports that CG31175 interacts with CG3263 CG33129 CG3509 CG3917 CG4621 CG4799 CG5005 CG5313 CG6506 CG6637 CG7281 CG8216 CG9083 CG9642 CG9769 .
TRiP has 1 RNAi stocks for FBgn0260003 available for purchase.
VDRC has 6 RNAi stocks for FBgn0260003 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain121 124 of 4 0.60Down
Head201 194 of 4 1.10None
Eye129 124 of 4 0.68Down
Thoracicoabdominal ganglion150 34 of 4 0.80None
Salivary gland429 384 of 4 2.24Up
Crop597 204 of 4 3.10Up
Midgut288 214 of 4 1.50Up
Tubule482 424 of 4 2.50Up
Hindgut537 154 of 4 2.80Up
Heart158 134 of 4 0.83None
Fat body268 484 of 4 1.40Up
Ovary353 94 of 4 1.80Up
Testis71 54 of 4 0.40Down
Male accessory glands328 124 of 4 1.70Up
Virgin spermatheca626 644 of 4 3.26Up
Mated spermatheca783 664 of 4 4.09Up
Adult carcass212 54 of 4 1.10None
Larval CNS242 204 of 4 1.26None
Larval Salivary gland899 604 of 4 4.69Up
Larval midgut504 234 of 4 2.63Up
Larval tubule897 444 of 4 4.70Up
Larval hindgut600 244 of 4 3.13Up
Larval fat body106 74 of 4 0.60Down
Larval trachea436 604 of 4 2.28Up
Larval carcass377 184 of 4 1.97Up
S2 cells (growing)177 94 of 4 0.92None
Whole fly191 184 of 4



Dystrophin (Dys):

Annotation Number : CG7344
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260003
Gbrowse : chr3R:15394933-15412287 (+) // 100.0 //
Probeset : 1638105_at
Accessions : protein= NP_001036721; /// NP_001036722; /// NP_001036723; /// NP_001036724; /// NP_001036725; /// NP_001036726; /// NP_001036727; /// NP_001036728;, nucleotide= NM_001043256; /// NM_001043257; /// NM_001043258; /// NM_001043259; /// NM_001043260; /// NM_001043261; /// NM_001043262; /// NM_001043263;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from sequence or str
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // inferred fro
FlyMine data for FBgn0260003.
TRiP has 1 RNAi stocks for FBgn0260003 available for purchase.
VDRC has 6 RNAi stocks for FBgn0260003 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 10 of 4 1.10None
Head4 20 of 4 0.50None
Eye4 10 of 4 0.54None
Thoracicoabdominal ganglion4 20 of 4 0.60None
Salivary gland16 30 of 4 1.94None
Crop8 00 of 4 1.00None
Midgut9 10 of 4 1.10None
Tubule5 00 of 4 0.70Down
Hindgut8 20 of 4 1.00None
Heart2 10 of 4 0.33None
Fat body13 40 of 4 1.56None
Ovary3 00 of 4 0.40None
Testis4 20 of 4 0.50None
Male accessory glands12 20 of 4 1.40None
Virgin spermatheca10 10 of 4 1.18None
Mated spermatheca10 30 of 4 1.17None
Adult carcass5 10 of 4 0.60None
Larval CNS5 30 of 4 0.59None
Larval Salivary gland8 20 of 4 0.94None
Larval midgut7 10 of 4 0.88None
Larval tubule30 33 of 4 3.50Up
Larval hindgut4 10 of 4 0.51None
Larval fat body4 20 of 4 0.50None
Larval trachea9 10 of 4 1.07None
Larval carcass5 10 of 4 0.68None
S2 cells (growing)4 10 of 4 0.46None
Whole fly8 20 of 4



Dystrophin (Dys):

Annotation Number : HDC14484
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260003
Gbrowse : chr3R:15287069-15287571 (+) // 100.0 //
Probeset : 1623999_at
Accessions : protein= NP_001036721; /// NP_001036722; /// NP_001036723; /// NP_001036724; /// NP_001036725; /// NP_001036726; /// NP_001036727; /// NP_001036728;, nucleotide= NM_001043256; /// NM_001043257; /// NM_001043258; /// NM_001043259; /// NM_001043260; /// NM_001043261; /// NM_001043262; /// NM_001043263;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from sequence or str
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0003779 // actin binding // inferred fro
FlyMine data for FBgn0260003.
TRiP has 1 RNAi stocks for FBgn0260003 available for purchase.
VDRC has 6 RNAi stocks for FBgn0260003 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 3.70Up
Head1 00 of 4 0.90None
Eye0 00 of 4 0.38None
Thoracicoabdominal ganglion4 20 of 4 2.60None
Salivary gland16 50 of 4 9.59None
Crop5 10 of 4 2.90None
Midgut3 00 of 4 1.90None
Tubule6 00 of 4 3.90Up
Hindgut3 10 of 4 2.10None
Heart0 00 of 4 0.38None
Fat body5 50 of 4 2.90None
Ovary0 00 of 4 0.20None
Testis1 00 of 4 1.00None
Male accessory glands2 00 of 4 1.20None
Virgin spermatheca4 20 of 4 2.86None
Mated spermatheca2 00 of 4 1.19None
Adult carcass0 00 of 4 0.50None
Larval CNS3 10 of 4 2.09None
Larval Salivary gland2 00 of 4 1.14None
Larval midgut2 00 of 4 1.52None
Larval tubule3 00 of 4 2.10None
Larval hindgut1 00 of 4 0.81None
Larval fat body6 21 of 4 3.60None
Larval trachea1 10 of 4 0.78None
Larval carcass0 00 of 4 0.33None
S2 cells (growing)1 00 of 4 0.62None
Whole fly1 00 of 4

Looking for FBgn0260003. 5 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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