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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260005 through 18771 annotations produced 1 hits



water witch (wtrw):

Annotation Number : CG31284
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260005
Gbrowse : chr3R:3717052-3726866 (+) // 100.0 //
Probeset : 1631526_s_at
Accessions : protein= NP_731193; /// NP_731194; /// NP_996181;, nucleotide= NM_169200; /// NM_169201; /// NM_206459;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005262 // calcium channel activity // inferr
FlyMine data for FBgn0260005.
Homophila reports that CG31284 is a close match (7e-11) to human gene AGS2;NOTCH2 (NP_077719), a gene associated with Alagille syndrome 2, 610205 (3).
TRiP has 2 RNAi stocks for FBgn0260005 available for purchase.
VDRC has 3 RNAi stocks for FBgn0260005 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain756 ± 194 of 415.20Up
Head324 ± 174 of 4 6.50Up
Eye294 ± 354 of 4 5.90Up
Thoracicoabdominal ganglion1198 ± 144 of 424.00Up
Salivary gland10 ± 20 of 4 0.22Down
Crop95 ± 14 of 4 1.90Up
Midgut14 ± 11 of 4 0.30Down
Tubule715 ± 1004 of 414.30Up
Hindgut121 ± 74 of 4 2.40Up
Heart3 ± 10 of 4 0.07Down
Fat body8 ± 20 of 4 0.17Down
Ovary15 ± 14 of 4 0.30Down
Testis18 ± 14 of 4 0.40Down
Male accessory glands23 ± 54 of 4 0.50Down
Virgin spermatheca8 ± 01 of 4 0.17Down
Mated spermatheca6 ± 20 of 4 0.13Down
Adult carcass33 ± 44 of 4 0.70Down
Larval CNS72 ± 54 of 4 1.46Up
Larval Salivary gland8 ± 20 of 4 0.17Down
Larval midgut14 ± 24 of 4 0.29Down
Larval tubule261 ± 114 of 4 5.20Up
Larval hindgut127 ± 114 of 4 2.56Up
Larval fat body6 ± 20 of 4 0.10Down
Larval trachea13 ± 91 of 4 0.26Down
Larval carcass19 ± 14 of 4 0.38Down
S2 cells (growing)4 ± 10 of 4 0.09Down
Whole fly49 ± 14 of 4

Looking for FBgn0260005. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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