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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260010 through 18771 annotations produced 1 hits



rumpelstiltskin (rump):

Annotation Number : CG9373
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260010
Gbrowse : chr3R:5331574-5336057 (-) // 100.0 //
Probeset : 1633767_at
Accessions : protein= NP_649899;, nucleotide= NM_141642;
Pathway : embryo // inferred from mutant phenotype"
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay
FlyMine data for FBgn0260010.
BioGrid reports that CG9373 interacts with CG9373 CG9983 .
VDRC has 3 RNAi stocks for FBgn0260010 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain637 ± 164 of 4 1.40Up
Head281 ± 234 of 4 0.60Down
Eye503 ± 194 of 4 1.11None
Thoracicoabdominal ganglion460 ± 324 of 4 1.00None
Salivary gland337 ± 354 of 4 0.74None
Crop232 ± 84 of 4 0.50Down
Midgut187 ± 134 of 4 0.40Down
Tubule277 ± 204 of 4 0.60Down
Hindgut301 ± 114 of 4 0.70Down
Heart229 ± 124 of 4 0.51Down
Fat body148 ± 274 of 4 0.33Down
Ovary712 ± 174 of 4 1.60Up
Testis618 ± 234 of 4 1.40Up
Male accessory glands268 ± 254 of 4 0.60Down
Virgin spermatheca244 ± 174 of 4 0.54Down
Mated spermatheca312 ± 164 of 4 0.69Down
Adult carcass241 ± 94 of 4 0.50Down
Larval CNS1151 ± 724 of 4 2.53Up
Larval Salivary gland372 ± 84 of 4 0.82None
Larval midgut238 ± 04 of 4 0.53Down
Larval tubule344 ± 44 of 4 0.80None
Larval hindgut373 ± 344 of 4 0.82None
Larval fat body388 ± 364 of 4 0.90None
Larval trachea764 ± 484 of 4 1.68Up
Larval carcass419 ± 344 of 4 0.92None
S2 cells (growing)799 ± 164 of 4 1.76Up
Whole fly454 ± 364 of 4

Looking for FBgn0260010. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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