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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260225 through 18771 annotations produced 1 hits



/// (CG32779 /// CG42499):

Annotation Number : CG32779
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0052779 /// FBgn0260225
Gbrowse : chrX:3696589-3698400 (+) // 100.0 // /// chrX:3687496-3689307 (+) // 99.93 //
Probeset : 1639841_at
Accessions : protein= NP_001162656; /// NP_726889;, nucleotide= NM_001169185; /// NM_166991;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0052779 /// FBgn0260225.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 4.30None
Head2 00 of 4 1.80None
Eye1 00 of 4 1.26None
Thoracicoabdominal ganglion2 10 of 4 2.20None
Salivary gland14 20 of 412.51Up
Crop4 10 of 4 3.70None
Midgut4 00 of 4 3.40Up
Tubule2 10 of 4 2.10None
Hindgut2 00 of 4 1.90None
Heart3 10 of 4 2.72None
Fat body3 10 of 4 3.02Up
Ovary2 10 of 4 2.40None
Testis1 00 of 4 1.10None
Male accessory glands3 10 of 4 2.90None
Virgin spermatheca3 10 of 4 2.74None
Mated spermatheca1 00 of 4 1.02None
Adult carcass6 10 of 4 5.70Up
Larval CNS3 30 of 4 3.21None
Larval Salivary gland1 00 of 4 1.51None
Larval midgut4 20 of 4 3.57None
Larval tubule1 00 of 4 1.20None
Larval hindgut7 10 of 4 6.74Up
Larval fat body8 31 of 4 7.50None
Larval trachea4 10 of 4 3.40None
Larval carcass1 00 of 4 1.45None
S2 cells (growing)2 10 of 4 2.28None
Whole fly1 00 of 4

Looking for FBgn0260225. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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