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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260228 through 18771 annotations produced 1 hits



/// (CG10570 /// CG42502):

Annotation Number : CG10570
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040992 /// FBgn0260228
Gbrowse : chr2L:18810035-18810986 (-) // 100.0 //
Probeset : 1636268_at
Accessions : protein= NP_001163011; /// NP_652585;, nucleotide= NM_001169540; /// NM_144328;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0040992 /// FBgn0260228.
BioGrid reports that CG10570 interacts with CG1461 CG9578 CG9665 CG33528 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain88 ± 24 of 4 0.00Down
Head3915 ± 1414 of 4 1.80Up
Eye3771 ± 1064 of 4 1.77Up
Thoracicoabdominal ganglion113 ± 434 of 4 0.10Down
Salivary gland56 ± 213 of 4 0.03Down
Crop505 ± 824 of 4 0.20Down
Midgut1 ± 00 of 4 0.00Down
Tubule8 ± 50 of 4 0.00Down
Hindgut40 ± 54 of 4 0.00Down
Heart882 ± 824 of 4 0.41Down
Fat body439 ± 1574 of 4 0.21Down
Ovary34 ± 34 of 4 0.00Down
Testis362 ± 14 of 4 0.20Down
Male accessory glands4085 ± 1094 of 4 1.90Up
Virgin spermatheca16 ± 14 of 4 0.01Down
Mated spermatheca22 ± 54 of 4 0.01Down
Adult carcass5277 ± 2514 of 4 2.50Up
Larval CNS183 ± 444 of 4 0.09Down
Larval Salivary gland5 ± 22 of 4 0.00Down
Larval midgut15 ± 52 of 4 0.01Down
Larval tubule10 ± 02 of 4 0.00Down
Larval hindgut371 ± 724 of 4 0.17Down
Larval fat body5 ± 21 of 4 0.00Down
Larval trachea972 ± 4004 of 4 0.46Down
Larval carcass4212 ± 3684 of 4 1.97Up
S2 cells (growing)25 ± 24 of 4 0.01Down
Whole fly2133 ± 744 of 4

Looking for FBgn0260228. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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