FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260231 through 18771 annotations produced 3 hits

/// /// (CG31358 /// CG42504 /// CG42505):

Annotation Number : CT40874
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051358 /// FBgn0260230 /// FBgn0260231
Gbrowse : chr3R:7854927-7855485 (-) // 100.0 //
Probeset : 1626230_s_at
Accessions : protein= NP_001163593; /// NP_001163594; /// NP_650147;, nucleotide= NM_001170122; /// NM_001170123; /// NM_141890;
Pathway : 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inf
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0051358 /// FBgn0260230 /// FBgn0260231.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	0 of 4	0.40	Down
Head	5 ± 0	0 of 4	0.50	Down
Eye	3 ± 0	0 of 4	0.30	Down
Thoracicoabdominal ganglion	4 ± 2	0 of 4	0.40	Down
Salivary gland	13 ± 3	0 of 4	1.25	None
Crop	8 ± 0	0 of 4	0.80	None
Midgut	7 ± 1	0 of 4	0.70	None
Tubule	4 ± 0	0 of 4	0.40	Down
Hindgut	6 ± 2	0 of 4	0.60	None
Heart	3 ± 0	0 of 4	0.34	Down
Fat body	7 ± 1	0 of 4	0.66	None
Ovary	3 ± 0	0 of 4	0.30	Down
Testis	100 ± 1	4 of 4	9.30	Up
Male accessory glands	7 ± 1	0 of 4	0.70	None
Virgin spermatheca	5 ± 1	1 of 4	0.52	None
Mated spermatheca	6 ± 0	1 of 4	0.58	Down
Adult carcass	7 ± 2	0 of 4	0.70	None
Larval CNS	4 ± 0	4 of 4	0.42	Down
Larval Salivary gland	7 ± 0	0 of 4	0.64	None
Larval midgut	10 ± 2	0 of 4	0.95	None
Larval tubule	7 ± 0	0 of 4	0.60	None
Larval hindgut	10 ± 1	3 of 4	1.00	None
Larval fat body	18 ± 6	1 of 4	1.70	None
Larval trachea	3 ± 4	1 of 4	0.34	Down
Larval carcass	5 ± 0	1 of 4	0.52	Down
S2 cells (growing)	5 ± 0	0 of 4	0.54	Down
Whole fly	10 ± 1	4 of 4

/// /// (CG31358 /// CG42504 /// CG42505):

Annotation Number : CG31358
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051358 /// FBgn0260230 /// FBgn0260231
Gbrowse : chr3R:7853791-7857453 (-) // 100.0 //
Probeset : 1629502_at
Accessions : protein= NP_001163593; /// NP_001163594; /// NP_650147;, nucleotide= NM_001170122; /// NM_001170123; /// NM_141890;
Pathway : 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inf
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0051358 /// FBgn0260230 /// FBgn0260231.
Homophila reports that CG31358 is a close match (2e-36) to human gene PDCN;NPHS2;SRN1 (NP_055440), a gene associated with Nephrotic syndrome, steroid-resistant, autosomal recessive, 600995 (3).

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.50	None
Head	1 ± 0	0 of 4	0.30	None
Eye	2 ± 0	0 of 4	0.62	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.20	None
Salivary gland	18 ± 4	0 of 4	4.55	Up
Crop	7 ± 2	0 of 4	1.80	None
Midgut	1 ± 0	0 of 4	0.40	None
Tubule	3 ± 0	0 of 4	0.90	None
Hindgut	1 ± 0	0 of 4	0.40	None
Heart	1 ± 0	0 of 4	0.38	None
Fat body	5 ± 5	0 of 4	1.41	None
Ovary	2 ± 1	0 of 4	0.60	None
Testis	62 ± 4	4 of 4	15.70	Up
Male accessory glands	3 ± 1	0 of 4	0.90	None
Virgin spermatheca	3 ± 1	0 of 4	0.78	None
Mated spermatheca	3 ± 0	0 of 4	0.81	None
Adult carcass	1 ± 0	0 of 4	0.50	None
Larval CNS	1 ± 0	0 of 4	0.38	None
Larval Salivary gland	4 ± 2	0 of 4	1.01	None
Larval midgut	1 ± 0	0 of 4	0.31	None
Larval tubule	1 ± 0	0 of 4	0.50	None
Larval hindgut	1 ± 0	0 of 4	0.24	None
Larval fat body	10 ± 3	1 of 4	2.60	None
Larval trachea	4 ± 1	0 of 4	1.20	None
Larval carcass	1 ± 0	0 of 4	0.47	None
S2 cells (growing)	2 ± 1	0 of 4	0.64	None
Whole fly	4 ± 1	0 of 4

/// /// (CG31358 /// CG42504 /// CG42505):

Annotation Number : CT40876
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051358 /// FBgn0260230 /// FBgn0260231
Gbrowse : chr3R:7854168-7854780 (-) // 100.0 //
Probeset : 1623419_s_at
Accessions : protein= NP_001163593; /// NP_001163594; /// NP_650147;, nucleotide= NM_001170122; /// NM_001170123; /// NM_141890;
Pathway : 0005887 // integral to plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inf
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0051358 /// FBgn0260230 /// FBgn0260231.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	0.40	None
Head	7 ± 2	0 of 4	0.90	None
Eye	3 ± 1	0 of 4	0.46	None
Thoracicoabdominal ganglion	2 ± 0	0 of 4	0.30	None
Salivary gland	4 ± 0	0 of 4	0.50	None
Crop	7 ± 1	0 of 4	0.90	None
Midgut	13 ± 2	0 of 4	1.70	None
Tubule	7 ± 0	0 of 4	0.90	Down
Hindgut	5 ± 0	0 of 4	0.70	None
Heart	1 ± 0	0 of 4	0.15	Down
Fat body	3 ± 0	0 of 4	0.42	None
Ovary	5 ± 1	0 of 4	0.60	None
Testis	36 ± 1	4 of 4	4.60	Up
Male accessory glands	2 ± 0	0 of 4	0.40	None
Virgin spermatheca	3 ± 1	0 of 4	0.39	None
Mated spermatheca	5 ± 2	0 of 4	0.64	None
Adult carcass	5 ± 1	0 of 4	0.60	None
Larval CNS	2 ± 2	0 of 4	0.36	None
Larval Salivary gland	3 ± 0	0 of 4	0.39	None
Larval midgut	5 ± 0	0 of 4	0.64	None
Larval tubule	4 ± 1	0 of 4	0.60	None
Larval hindgut	5 ± 1	0 of 4	0.66	None
Larval fat body	9 ± 5	0 of 4	1.20	None
Larval trachea	2 ± 0	0 of 4	0.29	None
Larval carcass	5 ± 1	0 of 4	0.65	None
S2 cells (growing)	4 ± 1	0 of 4	0.56	None
Whole fly	8 ± 2	0 of 4

Looking for FBgn0260231. 3 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720