Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260243 through 18771 annotations produced 1 hits



Enhancer of variegation 3-9 (E(var)3-9):

Annotation Number : CG11971
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260243
Gbrowse : chr3R:4816381-4818667 (-) // 100.0 //
Probeset : 1630743_at
Accessions : protein= NP_649852;, nucleotide= NM_141595;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from sequence or structural similarity /// 0008270 // zinc ion binding // in
FlyMine data for FBgn0260243.
BioGrid reports that CG11971 interacts with CG2674 CG7387 .
TRiP has 1 RNAi stocks for FBgn0260243 available for purchase.
VDRC has 1 RNAi stocks for FBgn0260243 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain128 ± 14 of 4 0.50Down
Head67 ± 14 of 4 0.20Down
Eye51 ± 24 of 4 0.18Down
Thoracicoabdominal ganglion122 ± 24 of 4 0.40Down
Salivary gland109 ± 84 of 4 0.39Down
Crop82 ± 34 of 4 0.30Down
Midgut94 ± 84 of 4 0.30Down
Tubule69 ± 34 of 4 0.20Down
Hindgut69 ± 24 of 4 0.20Down
Heart60 ± 34 of 4 0.22Down
Fat body53 ± 114 of 4 0.19Down
Ovary718 ± 44 of 4 2.60Up
Testis41 ± 24 of 4 0.10Down
Male accessory glands126 ± 54 of 4 0.50Down
Virgin spermatheca70 ± 14 of 4 0.25Down
Mated spermatheca95 ± 24 of 4 0.34Down
Adult carcass74 ± 84 of 4 0.30Down
Larval CNS241 ± 144 of 4 0.86None
Larval Salivary gland150 ± 64 of 4 0.54Down
Larval midgut92 ± 104 of 4 0.33Down
Larval tubule97 ± 54 of 4 0.30Down
Larval hindgut76 ± 14 of 4 0.27Down
Larval fat body133 ± 84 of 4 0.50Down
Larval trachea137 ± 154 of 4 0.49Down
Larval carcass111 ± 94 of 4 0.40Down
S2 cells (growing)183 ± 44 of 4 0.65Down
Whole fly280 ± 174 of 4

Looking for FBgn0260243. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime