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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260388 through 18771 annotations produced 1 hits



/// (CG42513 /// CG42514):

Annotation Number : CG32158
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260387 /// FBgn0260388
Gbrowse : chr3L:16484936-16516010 (-) // 100.0 //
Probeset : 1641693_s_at
Accessions : protein= NP_001097622; /// NP_648899; /// NP_730171; /// NP_730172; /// NP_730173;, nucleotide= NM_001104152; /// NM_140642; /// NM_168668; /// NM_168669; /// NM_168670;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004016 // adenylate cyclase activity // non-tr
FlyMine data for FBgn0260387 /// FBgn0260388.
Homophila reports that CG32158 is a close match (7e-17) to human gene CORD6;GUC2D;GUCY2D;LCA1 (NP_000171), a gene associated with Cone-rod dystrophy 6, 601777(3);Leber congenital amaurosis I, 204000 (3).
BioGrid reports that CG32158 interacts with CG3322 CG9025 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain185 ± 84 of 4 1.60Up
Head184 ± 104 of 4 1.60Up
Eye204 ± 104 of 4 1.73Up
Thoracicoabdominal ganglion177 ± 104 of 4 1.50Up
Salivary gland98 ± 34 of 4 0.84Down
Crop20 ± 22 of 4 0.20Down
Midgut200 ± 124 of 4 1.70Up
Tubule70 ± 64 of 4 0.60Down
Hindgut89 ± 84 of 4 0.80Down
Heart263 ± 74 of 4 2.23Up
Fat body656 ± 854 of 4 5.56Up
Ovary122 ± 54 of 4 1.00None
Testis15 ± 14 of 4 0.10Down
Male accessory glands16 ± 32 of 4 0.10Down
Virgin spermatheca751 ± 534 of 4 6.36Up
Mated spermatheca546 ± 584 of 4 4.62Up
Adult carcass275 ± 134 of 4 2.30Up
Larval CNS190 ± 304 of 4 1.61Up
Larval Salivary gland19 ± 21 of 4 0.16Down
Larval midgut155 ± 144 of 4 1.32None
Larval tubule12 ± 31 of 4 0.10Down
Larval hindgut119 ± 114 of 4 1.01None
Larval fat body327 ± 274 of 4 2.80Up
Larval trachea34 ± 84 of 4 0.29Down
Larval carcass27 ± 24 of 4 0.23Down
S2 cells (growing)285 ± 84 of 4 2.42Up
Whole fly118 ± 24 of 4

Looking for FBgn0260388. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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