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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260390 through 18771 annotations produced 1 hits



/// CG11508 (CG42516 /// Pbp49):

Annotation Number : CG11508
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260390 /// FBgn0260398
Gbrowse : chr2R:4016858-4018837 (-) // 100.0 //
Probeset : 1639367_a_at
Accessions : protein= NP_001163086; /// NP_001163087; /// NP_610357; /// NP_724647;, nucleotide= NM_001169615; /// NM_001169616; /// NM_136513; /// NM_165588;
Pathway : 0019185 // snRNA-activating protein complex // inferred from direct assay /// 0019185 // snRNA-activating protein comple
Interpro : 0003677 // DNA binding // inferred from direct assay /// 0003681 // bent DNA binding // inferred from direct assay /// 0
FlyMine data for FBgn0260390 /// FBgn0260398.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain59 24 of 4 0.70Down
Head35 14 of 4 0.40Down
Eye59 64 of 4 0.70Down
Thoracicoabdominal ganglion51 44 of 4 0.60Down
Salivary gland71 104 of 4 0.85None
Crop32 24 of 4 0.40Down
Midgut42 44 of 4 0.50Down
Tubule48 24 of 4 0.60Down
Hindgut40 34 of 4 0.50Down
Heart24 14 of 4 0.29Down
Fat body32 84 of 4 0.38Down
Ovary183 44 of 4 2.20Up
Testis83 14 of 4 1.00None
Male accessory glands192 74 of 4 2.30Up
Virgin spermatheca34 14 of 4 0.40Down
Mated spermatheca40 24 of 4 0.48Down
Adult carcass37 24 of 4 0.40Down
Larval CNS141 44 of 4 1.68Up
Larval Salivary gland81 84 of 4 0.97None
Larval midgut46 24 of 4 0.55Down
Larval tubule57 24 of 4 0.70Down
Larval hindgut57 24 of 4 0.68Down
Larval fat body37 34 of 4 0.40Down
Larval trachea69 84 of 4 0.83Down
Larval carcass50 44 of 4 0.60Down
S2 cells (growing)97 34 of 4 1.15None
Whole fly84 34 of 4

Looking for FBgn0260390. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime