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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260397 through 18771 annotations produced 1 hits



Suppressor of variegation 3-3 (Su(var)3-3):

Annotation Number : CG17149
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260397
Gbrowse : chr3L:20219516-20223351 (+) // 100.0 //
Probeset : 1634524_s_at
Accessions : protein= NP_649194; /// NP_730497;, nucleotide= NM_140937; /// NM_168835;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008168 // methyltransferase activity // inferred f
FlyMine data for FBgn0260397.
TRiP has 3 RNAi stocks for FBgn0260397 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260397 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain107 64 of 4 0.80None
Head52 64 of 4 0.40Down
Eye27 34 of 4 0.21Down
Thoracicoabdominal ganglion85 64 of 4 0.70Down
Salivary gland40 74 of 4 0.31Down
Crop48 24 of 4 0.40Down
Midgut40 24 of 4 0.30Down
Tubule35 44 of 4 0.30Down
Hindgut32 14 of 4 0.30Down
Heart20 24 of 4 0.16Down
Fat body29 64 of 4 0.23Down
Ovary293 44 of 4 2.30Up
Testis64 34 of 4 0.50Down
Male accessory glands87 14 of 4 0.70Down
Virgin spermatheca45 54 of 4 0.35Down
Mated spermatheca52 24 of 4 0.40Down
Adult carcass34 44 of 4 0.30Down
Larval CNS200 124 of 4 1.55Up
Larval Salivary gland72 34 of 4 0.56Down
Larval midgut37 14 of 4 0.29Down
Larval tubule56 14 of 4 0.40Down
Larval hindgut52 14 of 4 0.41Down
Larval fat body56 64 of 4 0.40Down
Larval trachea72 64 of 4 0.56Down
Larval carcass62 24 of 4 0.48Down
S2 cells (growing)105 44 of 4 0.81None
Whole fly129 94 of 4

Looking for FBgn0260397. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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