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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0260399 through 18771 annotations produced 1 hits


greatwall (gwl):

Annotation Number : CG7719
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260399
Gbrowse : chr3R:14572093-14576090 (+) // 100.0 //
Probeset : 1631785_at
Accessions : protein= NP_524860;, nucleotide= NM_080121;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trace
FlyMine data for FBgn0260399.
Homophila reports that CG7719 is a close match (3e-15) to human gene CDS1;CHEK2;CHK2;LFS2;RAD53 (NP_009125), a gene associated with Li-Fraumeni syndrome, 609265 (3);Osteosarcoma, somatic, 259500 (3);Prostate cancer, familial, 176807 (3);{Breast and colorectal cancer, susceptibility to} (3);{Breast cancer, susceptibility to}, 114480 (3).
TRiP has 2 RNAi stocks for FBgn0260399 available for purchase.
VDRC has 1 RNAi stocks for FBgn0260399 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye4 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland7 ± 21 of 4 0.04Down
Crop5 ± 11 of 4 0.00Down
Midgut3 ± 10 of 4 0.00Down
Tubule6 ± 40 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.00Down
Fat body5 ± 30 of 4 0.03Down
Ovary605 ± 154 of 4 3.30Up
Testis95 ± 54 of 4 0.50Down
Male accessory glands4 ± 20 of 4 0.00Down
Virgin spermatheca8 ± 12 of 4 0.04Down
Mated spermatheca5 ± 12 of 4 0.03Down
Adult carcass14 ± 72 of 4 0.10Down
Larval CNS65 ± 24 of 4 0.35Down
Larval Salivary gland10 ± 12 of 4 0.06Down
Larval midgut3 ± 10 of 4 0.02Down
Larval tubule5 ± 10 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.02Down
Larval fat body24 ± 62 of 4 0.10Down
Larval trachea15 ± 14 of 4 0.08Down
Larval carcass9 ± 00 of 4 0.05Down
S2 cells (growing)80 ± 24 of 4 0.43Down
Whole fly184 ± 284 of 4

Looking for FBgn0260399. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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