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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260401 through 18771 annotations produced 2 hits



Mediator complex subunit 9 /// Mediator complex subunit 9 (CG42518 /// MED9):

Annotation Number : CG5134
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260392 /// FBgn0260401
Gbrowse : chr2R:14054781-14055885 (+) // 100.0 //
Probeset : 1627646_at
Accessions : protein= NP_001163187; /// NP_001163188; /// NP_788400;, nucleotide= NM_001169716; /// NM_001169717; /// NM_176220;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0016592 // mediator complex // inferred from electronic an
Interpro : 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation /// 0016455 // RNA p
FlyMine data for FBgn0260392 /// FBgn0260401.
BioGrid reports that CG5134 interacts with CG6617 CG8609 CG5378 CG5681 CG7340 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain230 144 of 4 1.60Up
Head151 54 of 4 1.00None
Eye114 114 of 4 0.77None
Thoracicoabdominal ganglion187 94 of 4 1.30Up
Salivary gland138 104 of 4 0.93None
Crop120 74 of 4 0.80Down
Midgut137 94 of 4 0.90None
Tubule108 14 of 4 0.70Down
Hindgut160 14 of 4 1.10None
Heart116 64 of 4 0.79Down
Fat body180 184 of 4 1.22Up
Ovary164 64 of 4 1.10None
Testis283 164 of 4 1.90Up
Male accessory glands81 34 of 4 0.50Down
Virgin spermatheca58 24 of 4 0.40Down
Mated spermatheca55 44 of 4 0.37Down
Adult carcass181 124 of 4 1.20None
Larval CNS124 84 of 4 0.84Down
Larval Salivary gland297 244 of 4 2.01Up
Larval midgut117 194 of 4 0.79None
Larval tubule256 74 of 4 1.70Up
Larval hindgut149 154 of 4 1.00None
Larval fat body999 1084 of 4 6.70Up
Larval trachea68 34 of 4 0.46Down
Larval carcass203 264 of 4 1.37None
S2 cells (growing)154 74 of 4 1.04None
Whole fly148 64 of 4



Mediator complex subunit 9 /// Mediator complex subunit 9 (CG42518 /// MED9):

Annotation Number : CG5134
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260392 /// FBgn0260401
Gbrowse : chr2R:14054781-14055885 (+) // 100.0 //
Probeset : 1634176_a_at
Accessions : protein= NP_001163187; /// NP_001163188; /// NP_788400;, nucleotide= NM_001169716; /// NM_001169717; /// NM_176220;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0016592 // mediator complex // inferred from electronic an
Interpro : 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation /// 0016455 // RNA p
FlyMine data for FBgn0260392 /// FBgn0260401.
BioGrid reports that CG5134 interacts with CG6617 CG8609 CG5378 CG5681 CG7340 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain369 94 of 4 1.30Up
Head263 184 of 4 0.90None
Eye367 204 of 4 1.31Up
Thoracicoabdominal ganglion381 54 of 4 1.40Up
Salivary gland436 224 of 4 1.56Up
Crop274 84 of 4 1.00None
Midgut307 104 of 4 1.10None
Tubule219 54 of 4 0.80Down
Hindgut320 114 of 4 1.10None
Heart305 74 of 4 1.09None
Fat body180 124 of 4 0.64Down
Ovary280 64 of 4 1.00None
Testis404 44 of 4 1.40Up
Male accessory glands165 74 of 4 0.60Down
Virgin spermatheca99 34 of 4 0.35Down
Mated spermatheca91 14 of 4 0.33Down
Adult carcass361 74 of 4 1.30Up
Larval CNS204 144 of 4 0.73Down
Larval Salivary gland477 354 of 4 1.70Up
Larval midgut212 114 of 4 0.76Down
Larval tubule491 94 of 4 1.80Up
Larval hindgut215 94 of 4 0.77Down
Larval fat body1340 1624 of 4 4.80Up
Larval trachea222 114 of 4 0.79Down
Larval carcass334 664 of 4 1.19None
S2 cells (growing)268 44 of 4 0.96None
Whole fly280 164 of 4

Looking for FBgn0260401. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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