FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260401 through 18771 annotations produced 2 hits

Mediator complex subunit 9 /// Mediator complex subunit 9 (CG42518 /// MED9):

Annotation Number : CG5134
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260392 /// FBgn0260401
Gbrowse : chr2R:14054781-14055885 (+) // 100.0 //
Probeset : 1634176_a_at
Accessions : protein= NP_001163187; /// NP_001163188; /// NP_788400;, nucleotide= NM_001169716; /// NM_001169717; /// NM_176220;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0016592 // mediator complex // inferred from electronic an
Interpro : 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation /// 0016455 // RNA p
FlyMine data for FBgn0260392 /// FBgn0260401.
BioGrid reports that CG5134 interacts with CG6617 CG8609 CG5378 CG5681 CG7340 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	369 ± 9	4 of 4	1.30	Up
Head	263 ± 18	4 of 4	0.90	None
Eye	367 ± 20	4 of 4	1.31	Up
Thoracicoabdominal ganglion	381 ± 5	4 of 4	1.40	Up
Salivary gland	436 ± 22	4 of 4	1.56	Up
Crop	274 ± 8	4 of 4	1.00	None
Midgut	307 ± 10	4 of 4	1.10	None
Tubule	219 ± 5	4 of 4	0.80	Down
Hindgut	320 ± 11	4 of 4	1.10	None
Heart	305 ± 7	4 of 4	1.09	None
Fat body	180 ± 12	4 of 4	0.64	Down
Ovary	280 ± 6	4 of 4	1.00	None
Testis	404 ± 4	4 of 4	1.40	Up
Male accessory glands	165 ± 7	4 of 4	0.60	Down
Virgin spermatheca	99 ± 3	4 of 4	0.35	Down
Mated spermatheca	91 ± 1	4 of 4	0.33	Down
Adult carcass	361 ± 7	4 of 4	1.30	Up
Larval CNS	204 ± 14	4 of 4	0.73	Down
Larval Salivary gland	477 ± 35	4 of 4	1.70	Up
Larval midgut	212 ± 11	4 of 4	0.76	Down
Larval tubule	491 ± 9	4 of 4	1.80	Up
Larval hindgut	215 ± 9	4 of 4	0.77	Down
Larval fat body	1340 ± 162	4 of 4	4.80	Up
Larval trachea	222 ± 11	4 of 4	0.79	Down
Larval carcass	334 ± 66	4 of 4	1.19	None
S2 cells (growing)	268 ± 4	4 of 4	0.96	None
Whole fly	280 ± 16	4 of 4

Mediator complex subunit 9 /// Mediator complex subunit 9 (CG42518 /// MED9):

Annotation Number : CG5134
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260392 /// FBgn0260401
Gbrowse : chr2R:14054781-14055885 (+) // 100.0 //
Probeset : 1627646_at
Accessions : protein= NP_001163187; /// NP_001163188; /// NP_788400;, nucleotide= NM_001169716; /// NM_001169717; /// NM_176220;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0016592 // mediator complex // inferred from electronic an
Interpro : 0016455 // RNA polymerase II transcription mediator activity // inferred from electronic annotation /// 0016455 // RNA p
FlyMine data for FBgn0260392 /// FBgn0260401.
BioGrid reports that CG5134 interacts with CG6617 CG8609 CG5378 CG5681 CG7340 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	230 ± 14	4 of 4	1.60	Up
Head	151 ± 5	4 of 4	1.00	None
Eye	114 ± 11	4 of 4	0.77	None
Thoracicoabdominal ganglion	187 ± 9	4 of 4	1.30	Up
Salivary gland	138 ± 10	4 of 4	0.93	None
Crop	120 ± 7	4 of 4	0.80	Down
Midgut	137 ± 9	4 of 4	0.90	None
Tubule	108 ± 1	4 of 4	0.70	Down
Hindgut	160 ± 1	4 of 4	1.10	None
Heart	116 ± 6	4 of 4	0.79	Down
Fat body	180 ± 18	4 of 4	1.22	Up
Ovary	164 ± 6	4 of 4	1.10	None
Testis	283 ± 16	4 of 4	1.90	Up
Male accessory glands	81 ± 3	4 of 4	0.50	Down
Virgin spermatheca	58 ± 2	4 of 4	0.40	Down
Mated spermatheca	55 ± 4	4 of 4	0.37	Down
Adult carcass	181 ± 12	4 of 4	1.20	None
Larval CNS	124 ± 8	4 of 4	0.84	Down
Larval Salivary gland	297 ± 24	4 of 4	2.01	Up
Larval midgut	117 ± 19	4 of 4	0.79	None
Larval tubule	256 ± 7	4 of 4	1.70	Up
Larval hindgut	149 ± 15	4 of 4	1.00	None
Larval fat body	999 ± 108	4 of 4	6.70	Up
Larval trachea	68 ± 3	4 of 4	0.46	Down
Larval carcass	203 ± 26	4 of 4	1.37	None
S2 cells (growing)	154 ± 7	4 of 4	1.04	None
Whole fly	148 ± 6	4 of 4

Looking for FBgn0260401. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720