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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260439 through 18771 annotations produced 1 hits



regulatory subunit A of type 2A protein phosphatase (Pp2A-29B):

Annotation Number : CG13383
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260439
Gbrowse : chr2L:8364866-8370085 (+) // 100.0 //
Probeset : 1625851_s_at
Accessions : protein= NP_001027226; /// NP_001027227;, nucleotide= NM_001032055; /// NM_001032056;
Pathway : engulfment // inferred from mutant phenotype /// 0007052 // mitotic spindle organization // inferred from mutant phenot
Interpro : 0000159 // protein phosphatase type 2A complex // inferred from sequence or structural similarity /// 0005634 // nucleus
FlyMine data for FBgn0260439.
BioGrid reports that CG13383 interacts with CG14684 CG18332 CG3891 CG3988 CG5643 CG6175 CG7392 CG7910 CG8284 CG9312 .
TRiP has 2 RNAi stocks for FBgn0260439 available for purchase.
VDRC has 3 RNAi stocks for FBgn0260439 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain538 114 of 4 1.20None
Head359 334 of 4 0.80None
Eye431 54 of 4 0.94None
Thoracicoabdominal ganglion386 104 of 4 0.80None
Salivary gland509 364 of 4 1.10None
Crop450 114 of 4 1.00None
Midgut445 104 of 4 1.00None
Tubule874 164 of 4 1.90Up
Hindgut642 144 of 4 1.40Up
Heart573 144 of 4 1.24None
Fat body373 424 of 4 0.81None
Ovary528 94 of 4 1.10None
Testis308 164 of 4 0.70Down
Male accessory glands480 164 of 4 1.00None
Virgin spermatheca343 184 of 4 0.74Down
Mated spermatheca325 184 of 4 0.71Down
Adult carcass355 384 of 4 0.80None
Larval CNS853 894 of 4 1.85Up
Larval Salivary gland660 84 of 4 1.43Up
Larval midgut496 84 of 4 1.08None
Larval tubule800 164 of 4 1.70Up
Larval hindgut701 124 of 4 1.52Up
Larval fat body341 184 of 4 0.70Down
Larval trachea736 504 of 4 1.60Up
Larval carcass723 334 of 4 1.57Up
S2 cells (growing)1094 104 of 4 2.37Up
Whole fly461 384 of 4

Looking for FBgn0260439. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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