FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260440 through 18771 annotations produced 1 hits

sanpodo (spdo):

Annotation Number : CG31020
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260440
Gbrowse : chr3R:26302410-26304311 (+) // 100.0 //
Probeset : 1637254_at
Accessions : protein= NP_733372;, nucleotide= NM_170493;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005769 // early endosome // inferred from direct assay /// 00057
Interpro : 0005112 // Notch binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical
FlyMine data for FBgn0260440.
TRiP has 1 RNAi stocks for FBgn0260440 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260440 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 1	2 of 4	0.50	Down
Head	8 ± 0	1 of 4	0.70	None
Eye	5 ± 0	1 of 4	0.50	Down
Thoracicoabdominal ganglion	11 ± 1	2 of 4	0.90	None
Salivary gland	13 ± 3	0 of 4	1.12	None
Crop	12 ± 2	2 of 4	1.00	None
Midgut	34 ± 3	4 of 4	3.00	Up
Tubule	9 ± 0	2 of 4	0.80	Down
Hindgut	14 ± 0	3 of 4	1.20	None
Heart	4 ± 1	1 of 4	0.40	Down
Fat body	14 ± 4	3 of 4	1.26	None
Ovary	6 ± 0	3 of 4	0.60	Down
Testis	4 ± 1	1 of 4	0.40	Down
Male accessory glands	55 ± 2	4 of 4	4.70	Up
Virgin spermatheca	19 ± 1	4 of 4	1.68	Up
Mated spermatheca	18 ± 1	4 of 4	1.53	Up
Adult carcass	13 ± 2	0 of 4	1.20	None
Larval CNS	240 ± 27	4 of 4	20.33	Up
Larval Salivary gland	6 ± 2	0 of 4	0.58	None
Larval midgut	31 ± 2	4 of 4	2.65	Up
Larval tubule	11 ± 1	2 of 4	1.00	None
Larval hindgut	9 ± 1	3 of 4	0.77	None
Larval fat body	12 ± 1	3 of 4	1.10	None
Larval trachea	6 ± 1	1 of 4	0.53	Down
Larval carcass	6 ± 2	0 of 4	0.55	None
S2 cells (growing)	14 ± 0	4 of 4	1.24	None
Whole fly	11 ± 1	4 of 4

Looking for FBgn0260440. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720