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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260440 through 18771 annotations produced 1 hits



sanpodo (spdo):

Annotation Number : CG31020
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260440
Gbrowse : chr3R:26302410-26304311 (+) // 100.0 //
Probeset : 1637254_at
Accessions : protein= NP_733372;, nucleotide= NM_170493;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005769 // early endosome // inferred from direct assay /// 00057
Interpro : 0005112 // Notch binding // inferred from physical interaction /// 0005515 // protein binding // inferred from physical
FlyMine data for FBgn0260440.
TRiP has 1 RNAi stocks for FBgn0260440 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260440 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 12 of 4 0.50Down
Head8 01 of 4 0.70None
Eye5 01 of 4 0.50Down
Thoracicoabdominal ganglion11 12 of 4 0.90None
Salivary gland13 30 of 4 1.12None
Crop12 22 of 4 1.00None
Midgut34 34 of 4 3.00Up
Tubule9 02 of 4 0.80Down
Hindgut14 03 of 4 1.20None
Heart4 11 of 4 0.40Down
Fat body14 43 of 4 1.26None
Ovary6 03 of 4 0.60Down
Testis4 11 of 4 0.40Down
Male accessory glands55 24 of 4 4.70Up
Virgin spermatheca19 14 of 4 1.68Up
Mated spermatheca18 14 of 4 1.53Up
Adult carcass13 20 of 4 1.20None
Larval CNS240 274 of 420.33Up
Larval Salivary gland6 20 of 4 0.58None
Larval midgut31 24 of 4 2.65Up
Larval tubule11 12 of 4 1.00None
Larval hindgut9 13 of 4 0.77None
Larval fat body12 13 of 4 1.10None
Larval trachea6 11 of 4 0.53Down
Larval carcass6 20 of 4 0.55None
S2 cells (growing)14 04 of 4 1.24None
Whole fly11 14 of 4

Looking for FBgn0260440. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime