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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0260442 through 18771 annotations produced 1 hits

tendrils (rhea):

Annotation Number : CG6831
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260442
Gbrowse : chr3L:8554356-8567500 (+) // 100.0 //
Probeset : 1628141_at
Accessions : protein= NP_648238;, nucleotide= NM_139981;
Pathway : engulfment // inferred from mutant phenotype /// 0007016 // cytoskeletal anchoring at plasma membrane // inferred from
Interpro : open tracheal system // inferred from mutant phenotype"
FlyMine data for FBgn0260442.
BioGrid reports that CG6831 interacts with CG1560 .
TRiP has 3 RNAi stocks for FBgn0260442 available for purchase.
VDRC has 2 RNAi stocks for FBgn0260442 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain685 44 of 4 1.50Up
Head540 214 of 4 1.20None
Eye690 474 of 4 1.52Up
Thoracicoabdominal ganglion1511 284 of 4 3.30Up
Salivary gland896 804 of 4 1.97Up
Crop1821 114 of 4 4.00Up
Midgut603 204 of 4 1.30Up
Tubule626 174 of 4 1.40Up
Hindgut864 304 of 4 1.90Up
Heart1206 264 of 4 2.66Up
Fat body431 744 of 4 0.95None
Ovary511 154 of 4 1.10None
Testis206 94 of 4 0.50Down
Male accessory glands473 44 of 4 1.00None
Virgin spermatheca384 314 of 4 0.85None
Mated spermatheca604 414 of 4 1.33None
Adult carcass670 144 of 4 1.50Up
Larval CNS1456 324 of 4 3.21Up
Larval Salivary gland889 264 of 4 1.96Up
Larval midgut1054 274 of 4 2.32Up
Larval tubule965 444 of 4 2.10Up
Larval hindgut1321 334 of 4 2.91Up
Larval fat body448 414 of 4 1.00None
Larval trachea1008 444 of 4 2.22Up
Larval carcass1615 824 of 4 3.56Up
S2 cells (growing)1112 164 of 4 2.45Up
Whole fly453 454 of 4

Looking for FBgn0260442. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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