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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260446 through 18771 annotations produced 1 hits



metabotropic GABA-B receptor subtype 1 (GABA-B-R1):

Annotation Number : CG15274
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260446
Gbrowse : chr2L:15017153-15032191 (+) // 100.0 //
Probeset : 1630047_at
Accessions : protein= NP_523569;, nucleotide= NM_078845;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0260446.
Homophila reports that CG15274 is a close match (3e-136) to human gene GPR51;GABBR2 (NP_005449), a gene associated with {Nicotine dependence, protection against}, 188890 (3);{Nicotine dependence, susceptibility to}, 188890 (3).
TRiP has 1 RNAi stocks for FBgn0260446 available for purchase.
VDRC has 1 RNAi stocks for FBgn0260446 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain47 14 of 4 8.10Up
Head17 14 of 4 2.90Up
Eye6 11 of 4 1.02None
Thoracicoabdominal ganglion34 64 of 4 5.90Up
Salivary gland9 50 of 4 1.68None
Crop7 11 of 4 1.20None
Midgut2 00 of 4 0.40None
Tubule6 00 of 4 1.20Up
Hindgut7 20 of 4 1.20None
Heart3 10 of 4 0.53None
Fat body7 10 of 4 1.31None
Ovary2 00 of 4 0.30None
Testis11 14 of 4 2.00Up
Male accessory glands7 30 of 4 1.20None
Virgin spermatheca13 13 of 4 2.33Up
Mated spermatheca10 13 of 4 1.73None
Adult carcass11 10 of 4 1.90Up
Larval CNS13 24 of 4 2.22Up
Larval Salivary gland6 21 of 4 1.10None
Larval midgut7 10 of 4 1.18None
Larval tubule8 00 of 4 1.40None
Larval hindgut4 10 of 4 0.77None
Larval fat body13 20 of 4 2.30None
Larval trachea3 10 of 4 0.53None
Larval carcass6 01 of 4 1.07None
S2 cells (growing)5 00 of 4 0.93None
Whole fly5 11 of 4

Looking for FBgn0260446. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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