FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260446 through 18771 annotations produced 1 hits

metabotropic GABA-B receptor subtype 1 (GABA-B-R1):

Annotation Number : CG15274
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260446
Gbrowse : chr2L:15017153-15032191 (+) // 100.0 //
Probeset : 1630047_at
Accessions : protein= NP_523569;, nucleotide= NM_078845;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0260446.
Homophila reports that CG15274 is a close match (3e-136) to human gene GPR51;GABBR2 (NP_005449), a gene associated with {Nicotine dependence, protection against}, 188890 (3);{Nicotine dependence, susceptibility to}, 188890 (3).
TRiP has 1 RNAi stocks for FBgn0260446 available for purchase.
VDRC has 1 RNAi stocks for FBgn0260446 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	47 ± 1	4 of 4	8.10	Up
Head	17 ± 1	4 of 4	2.90	Up
Eye	6 ± 1	1 of 4	1.02	None
Thoracicoabdominal ganglion	34 ± 6	4 of 4	5.90	Up
Salivary gland	9 ± 5	0 of 4	1.68	None
Crop	7 ± 1	1 of 4	1.20	None
Midgut	2 ± 0	0 of 4	0.40	None
Tubule	6 ± 0	0 of 4	1.20	Up
Hindgut	7 ± 2	0 of 4	1.20	None
Heart	3 ± 1	0 of 4	0.53	None
Fat body	7 ± 1	0 of 4	1.31	None
Ovary	2 ± 0	0 of 4	0.30	None
Testis	11 ± 1	4 of 4	2.00	Up
Male accessory glands	7 ± 3	0 of 4	1.20	None
Virgin spermatheca	13 ± 1	3 of 4	2.33	Up
Mated spermatheca	10 ± 1	3 of 4	1.73	None
Adult carcass	11 ± 1	0 of 4	1.90	Up
Larval CNS	13 ± 2	4 of 4	2.22	Up
Larval Salivary gland	6 ± 2	1 of 4	1.10	None
Larval midgut	7 ± 1	0 of 4	1.18	None
Larval tubule	8 ± 0	0 of 4	1.40	None
Larval hindgut	4 ± 1	0 of 4	0.77	None
Larval fat body	13 ± 2	0 of 4	2.30	None
Larval trachea	3 ± 1	0 of 4	0.53	None
Larval carcass	6 ± 0	1 of 4	1.07	None
S2 cells (growing)	5 ± 0	0 of 4	0.93	None
Whole fly	5 ± 1	1 of 4

Looking for FBgn0260446. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720