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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260450 through 18771 annotations produced 1 hits



Calpain C (CalpC):

Annotation Number : CG3692
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260450
Gbrowse : chrX:16219801-16222556 (+) // 99.85 //
Probeset : 1640077_at
Accessions : protein= NP_573118;, nucleotide= NM_132890;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author stateme
Interpro : 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from electronic annotation /// 0004198 //
FlyMine data for FBgn0260450.
Homophila reports that CG3692 is a close match (4e-16) to human gene CANP3;CAPN3 (NP_775113), a gene associated with Muscular dystrophy, limb-girdle, type 2A, 253600 (3).
VDRC has 2 RNAi stocks for FBgn0260450 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 ± 24 of 4 0.50Down
Head39 ± 24 of 4 0.90None
Eye29 ± 04 of 4 0.65Down
Thoracicoabdominal ganglion20 ± 24 of 4 0.40Down
Salivary gland104 ± 104 of 4 2.33Up
Crop77 ± 44 of 4 1.70Up
Midgut40 ± 14 of 4 0.90None
Tubule45 ± 14 of 4 1.00None
Hindgut50 ± 14 of 4 1.10None
Heart30 ± 54 of 4 0.67None
Fat body56 ± 84 of 4 1.25None
Ovary81 ± 24 of 4 1.80Up
Testis14 ± 02 of 4 0.30Down
Male accessory glands107 ± 104 of 4 2.40Up
Virgin spermatheca31 ± 24 of 4 0.71Down
Mated spermatheca36 ± 34 of 4 0.81None
Adult carcass54 ± 84 of 4 1.20None
Larval CNS86 ± 134 of 4 1.93Up
Larval Salivary gland80 ± 74 of 4 1.79Up
Larval midgut46 ± 54 of 4 1.04None
Larval tubule24 ± 14 of 4 0.50Down
Larval hindgut54 ± 24 of 4 1.22None
Larval fat body14 ± 30 of 4 0.30Down
Larval trachea186 ± 164 of 4 4.14Up
Larval carcass108 ± 34 of 4 2.41Up
S2 cells (growing)128 ± 84 of 4 2.86Up
Whole fly45 ± 34 of 4

Looking for FBgn0260450. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime