Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260451 through 18771 annotations produced 2 hits



/// SP555 (CG14042 /// SP555):

Annotation Number : CG14041
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260451 /// FBgn0260470
Gbrowse : chr2L:5038052-5040818 (+) // 100.0 //
Probeset : 1641237_a_at
Accessions : protein= NP_001036336; /// NP_001036337; /// NP_652616; /// NP_723047;, nucleotide= NM_001042871; /// NM_001042872; /// NM_144359; /// NM_164618;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0260451 /// FBgn0260470.
BioGrid reports that CG14041 interacts with CG9291 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain398 144 of 4 7.10Up
Head124 104 of 4 2.20Up
Eye191 154 of 4 3.39Up
Thoracicoabdominal ganglion422 44 of 4 7.50Up
Salivary gland6 11 of 4 0.11Down
Crop4 11 of 4 0.10Down
Midgut6 21 of 4 0.10Down
Tubule2 00 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart1 10 of 4 0.03Down
Fat body2 10 of 4 0.04Down
Ovary1 00 of 4 0.00Down
Testis542 204 of 4 9.60Up
Male accessory glands7 11 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.02Down
Mated spermatheca3 00 of 4 0.06Down
Adult carcass8 12 of 4 0.20Down
Larval CNS336 414 of 4 5.97Up
Larval Salivary gland3 10 of 4 0.06Down
Larval midgut6 11 of 4 0.12Down
Larval tubule2 00 of 4 0.00Down
Larval hindgut2 00 of 4 0.04Down
Larval fat body50 273 of 4 0.90None
Larval trachea5 32 of 4 0.09Down
Larval carcass2 01 of 4 0.05Down
S2 cells (growing)2 00 of 4 0.04Down
Whole fly56 74 of 4



/// SP555 (CG14042 /// SP555):

Annotation Number : CT33601
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260451 /// FBgn0260470
Gbrowse : chr2L:5038052-5038757 (+) // 100.0 //
Probeset : 1629539_s_at
Accessions : protein= NP_001036336; /// NP_001036337; /// NP_652616; /// NP_723047;, nucleotide= NM_001042871; /// NM_001042872; /// NM_144359; /// NM_164618;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0260451 /// FBgn0260470.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 44 of 4 7.70Up
Head12 14 of 4 2.60Up
Eye10 04 of 4 2.06Up
Thoracicoabdominal ganglion31 74 of 4 6.40Up
Salivary gland9 70 of 4 1.93None
Crop6 11 of 4 1.30None
Midgut5 00 of 4 1.10None
Tubule6 00 of 4 1.40Up
Hindgut5 10 of 4 1.10None
Heart5 12 of 4 1.18None
Fat body8 22 of 4 1.70None
Ovary1 00 of 4 0.40None
Testis4 00 of 4 0.90None
Male accessory glands12 21 of 4 2.50Up
Virgin spermatheca9 12 of 4 1.83None
Mated spermatheca8 13 of 4 1.65None
Adult carcass12 22 of 4 2.50Up
Larval CNS11 24 of 4 2.36Up
Larval Salivary gland9 12 of 4 1.83None
Larval midgut7 10 of 4 1.52None
Larval tubule7 12 of 4 1.60None
Larval hindgut6 01 of 4 1.22None
Larval fat body5 10 of 4 1.20None
Larval trachea4 30 of 4 0.99None
Larval carcass6 10 of 4 1.34None
S2 cells (growing)5 01 of 4 1.18None
Whole fly4 10 of 4

Looking for FBgn0260451. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime