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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0260452 through 18771 annotations produced 1 hits


Annotation Number : CG13984
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260452
Gbrowse : chr2L:6308866-6309169 (+) // 100.0 //
Probeset : 1629096_at
Accessions : protein= NP_609010;, nucleotide= NM_135166;
FlyMine data for FBgn0260452.
VDRC has 2 RNAi stocks for FBgn0260452 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.20Down
Head4 10 of 4 0.10Down
Eye2 00 of 4 0.10Down
Thoracicoabdominal ganglion2 10 of 4 0.10Down
Salivary gland2 00 of 4 0.10Down
Crop3 10 of 4 0.10Down
Midgut1 00 of 4 0.10Down
Tubule5 00 of 4 0.20Down
Hindgut1 00 of 4 0.10Down
Heart2 10 of 4 0.10Down
Fat body2 00 of 4 0.07Down
Ovary1 00 of 4 0.00Down
Testis340 164 of 412.20Up
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca2 00 of 4 0.08Down
Mated spermatheca2 10 of 4 0.08Down
Adult carcass3 20 of 4 0.10Down
Larval CNS3 10 of 4 0.11Down
Larval Salivary gland2 00 of 4 0.08Down
Larval midgut1 00 of 4 0.05Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut1 00 of 4 0.07Down
Larval fat body37 132 of 4 1.30None
Larval trachea4 30 of 4 0.14Down
Larval carcass4 10 of 4 0.16Down
S2 cells (growing)1 00 of 4 0.05Down
Whole fly28 13 of 4

Looking for FBgn0260452. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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