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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260453 through 18771 annotations produced 1 hits



/// (CG17139 /// CG17140):

Annotation Number : CG31722
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260453 /// FBgn0260454
Gbrowse : chr2L:10843010-10845664 (-) // 100.0 //
Probeset : 1623832_a_at
Accessions : protein= NP_001033896; /// NP_001033897; /// NP_001033898;, nucleotide= NM_001038807; /// NM_001038808; /// NM_001038809;
Pathway : 0005741 // mitochondrial outer membrane // inferred from electronic annotation
Interpro : 0008308 // voltage-gated anion channel activity // inferred from sequence or structural similarity /// 0008308 // voltag
FlyMine data for FBgn0260453 /// FBgn0260454.
BioGrid reports that CG31722 interacts with CG7069 CG9986 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 10 of 4 0.10Down
Head17 ± 01 of 4 0.20Down
Eye4 ± 10 of 4 0.06Down
Thoracicoabdominal ganglion11 ± 10 of 4 0.20Down
Salivary gland21 ± 01 of 4 0.30Down
Crop16 ± 10 of 4 0.20Down
Midgut20 ± 10 of 4 0.30Down
Tubule8 ± 00 of 4 0.10Down
Hindgut14 ± 10 of 4 0.20Down
Heart8 ± 20 of 4 0.12Down
Fat body20 ± 50 of 4 0.28Down
Ovary5 ± 10 of 4 0.10Down
Testis614 ± 294 of 4 8.30Up
Male accessory glands14 ± 20 of 4 0.20Down
Virgin spermatheca9 ± 30 of 4 0.13Down
Mated spermatheca11 ± 10 of 4 0.15Down
Adult carcass31 ± 51 of 4 0.40Down
Larval CNS7 ± 11 of 4 0.10Down
Larval Salivary gland9 ± 31 of 4 0.13Down
Larval midgut9 ± 20 of 4 0.13Down
Larval tubule15 ± 10 of 4 0.20Down
Larval hindgut8 ± 10 of 4 0.11Down
Larval fat body113 ± 473 of 4 1.50None
Larval trachea6 ± 71 of 4 0.09Down
Larval carcass12 ± 10 of 4 0.16Down
S2 cells (growing)9 ± 20 of 4 0.13Down
Whole fly73 ± 44 of 4

Looking for FBgn0260453. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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