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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260455 through 18771 annotations produced 1 hits



/// Immune induced molecule 18 (CG10332 /// IM18):

Annotation Number : CG10332
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0067903 /// FBgn0260455
Gbrowse : chr2R:19488436-19489296 (-) // 100.0 //
Probeset : 1622952_at
Accessions : protein= NP_001027447; /// NP_611809;, nucleotide= NM_001032276; /// NM_137965; /// NM_137965;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
FlyMine data for FBgn0067903 /// FBgn0260455.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 00 of 4 0.10Down
Head33 ± 64 of 4 0.50Down
Eye17 ± 34 of 4 0.24Down
Thoracicoabdominal ganglion9 ± 20 of 4 0.10Down
Salivary gland10 ± 30 of 4 0.15Down
Crop6 ± 10 of 4 0.10Down
Midgut16 ± 52 of 4 0.20Down
Tubule6 ± 10 of 4 0.10Down
Hindgut13 ± 20 of 4 0.20Down
Heart16 ± 43 of 4 0.22Down
Fat body32 ± 222 of 4 0.45None
Ovary3 ± 10 of 4 0.00Down
Testis658 ± 174 of 4 9.00Up
Male accessory glands7 ± 20 of 4 0.10Down
Virgin spermatheca12 ± 13 of 4 0.17Down
Mated spermatheca11 ± 10 of 4 0.15Down
Adult carcass25 ± 31 of 4 0.30Down
Larval CNS5 ± 02 of 4 0.08Down
Larval Salivary gland14 ± 23 of 4 0.20Down
Larval midgut10 ± 41 of 4 0.14Down
Larval tubule17 ± 13 of 4 0.20Down
Larval hindgut4 ± 10 of 4 0.06Down
Larval fat body55 ± 214 of 4 0.80None
Larval trachea12 ± 53 of 4 0.17Down
Larval carcass15 ± 42 of 4 0.21Down
S2 cells (growing)2 ± 10 of 4 0.04Down
Whole fly72 ± 134 of 4

Looking for FBgn0260455. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime