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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260456 through 18771 annotations produced 1 hits



lethal (2) SH0542 /// (CG33228 /// CG4806):

Annotation Number : CG4806
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260456
Gbrowse : chr2R:20553674-20555853 (-) // 100.0 //
Probeset : 1624513_at
Accessions : protein= NP_611955;, nucleotide= NM_138111;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0260456.
Homophila reports that CG4806 is a close match (2e-41) to human gene RBM28 (NP_060547), a gene associated with Alopecia, neurologic defects, and endocrinopathy syndrome, 612079 (3).
VDRC has 2 RNAi stocks for FBgn0260456 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain60 24 of 4 1.00None
Head52 24 of 4 0.90None
Eye43 24 of 4 0.75Down
Thoracicoabdominal ganglion50 34 of 4 0.90None
Salivary gland60 23 of 4 1.06None
Crop51 24 of 4 0.90None
Midgut40 04 of 4 0.70Down
Tubule45 54 of 4 0.80Down
Hindgut39 14 of 4 0.70Down
Heart32 04 of 4 0.57Down
Fat body66 54 of 4 1.16Up
Ovary146 34 of 4 2.50Up
Testis6 10 of 4 0.10Down
Male accessory glands73 24 of 4 1.30Up
Virgin spermatheca55 14 of 4 0.96None
Mated spermatheca57 34 of 4 1.01None
Adult carcass38 83 of 4 0.70None
Larval CNS80 74 of 4 1.39Up
Larval Salivary gland46 24 of 4 0.80Down
Larval midgut30 34 of 4 0.52Down
Larval tubule14 14 of 4 0.20Down
Larval hindgut42 34 of 4 0.73Down
Larval fat body15 31 of 4 0.30Down
Larval trachea55 64 of 4 0.96None
Larval carcass49 124 of 4 0.85None
S2 cells (growing)92 24 of 4 1.60Up
Whole fly57 14 of 4

Looking for FBgn0260456. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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