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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260460 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein S34 (mRpS34):

Annotation Number : CG13037
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260460
Gbrowse : chr3L:16341196-16341876 (+) // 100.0 //
Probeset : 1631996_at
Accessions : protein= NP_524104;, nucleotide= NM_079380;
Pathway : 0005763 // mitochondrial small ribosomal subunit // inferred from sequence or structural similarity /// 0005840 // ribos
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity
FlyMine data for FBgn0260460.
VDRC has 3 RNAi stocks for FBgn0260460 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain161 24 of 4 0.80None
Head164 54 of 4 0.80Down
Eye271 144 of 4 1.36Up
Thoracicoabdominal ganglion217 54 of 4 1.10None
Salivary gland157 84 of 4 0.79Down
Crop218 54 of 4 1.10None
Midgut137 34 of 4 0.70Down
Tubule167 14 of 4 0.80Down
Hindgut222 34 of 4 1.10None
Heart183 44 of 4 0.92None
Fat body163 64 of 4 0.82Down
Ovary294 54 of 4 1.50Up
Testis142 34 of 4 0.70Down
Male accessory glands171 64 of 4 0.90None
Virgin spermatheca161 34 of 4 0.81Down
Mated spermatheca167 34 of 4 0.84None
Adult carcass156 84 of 4 0.80Down
Larval CNS253 154 of 4 1.27Up
Larval Salivary gland208 104 of 4 1.04None
Larval midgut129 44 of 4 0.65Down
Larval tubule136 44 of 4 0.70Down
Larval hindgut212 124 of 4 1.06None
Larval fat body143 54 of 4 0.70Down
Larval trachea224 204 of 4 1.12None
Larval carcass141 154 of 4 0.71Down
S2 cells (growing)243 64 of 4 1.22Up
Whole fly199 114 of 4

Looking for FBgn0260460. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime