FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0260460 through 18771 annotations produced 1 hits

mitochondrial ribosomal protein S34 (mRpS34):

Annotation Number : CG13037
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260460
Gbrowse : chr3L:16341196-16341876 (+) // 100.0 //
Probeset : 1631996_at
Accessions : protein= NP_524104;, nucleotide= NM_079380;
Pathway : 0005763 // mitochondrial small ribosomal subunit // inferred from sequence or structural similarity /// 0005840 // ribos
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity
FlyMine data for FBgn0260460.
VDRC has 3 RNAi stocks for FBgn0260460 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	161 ± 2	4 of 4	0.80	None
Head	164 ± 5	4 of 4	0.80	Down
Eye	271 ± 14	4 of 4	1.36	Up
Thoracicoabdominal ganglion	217 ± 5	4 of 4	1.10	None
Salivary gland	157 ± 8	4 of 4	0.79	Down
Crop	218 ± 5	4 of 4	1.10	None
Midgut	137 ± 3	4 of 4	0.70	Down
Tubule	167 ± 1	4 of 4	0.80	Down
Hindgut	222 ± 3	4 of 4	1.10	None
Heart	183 ± 4	4 of 4	0.92	None
Fat body	163 ± 6	4 of 4	0.82	Down
Ovary	294 ± 5	4 of 4	1.50	Up
Testis	142 ± 3	4 of 4	0.70	Down
Male accessory glands	171 ± 6	4 of 4	0.90	None
Virgin spermatheca	161 ± 3	4 of 4	0.81	Down
Mated spermatheca	167 ± 3	4 of 4	0.84	None
Adult carcass	156 ± 8	4 of 4	0.80	Down
Larval CNS	253 ± 15	4 of 4	1.27	Up
Larval Salivary gland	208 ± 10	4 of 4	1.04	None
Larval midgut	129 ± 4	4 of 4	0.65	Down
Larval tubule	136 ± 4	4 of 4	0.70	Down
Larval hindgut	212 ± 12	4 of 4	1.06	None
Larval fat body	143 ± 5	4 of 4	0.70	Down
Larval trachea	224 ± 20	4 of 4	1.12	None
Larval carcass	141 ± 15	4 of 4	0.71	Down
S2 cells (growing)	243 ± 6	4 of 4	1.22	Up
Whole fly	199 ± 11	4 of 4

Looking for FBgn0260460. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720