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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0260463 through 18771 annotations produced 2 hits



unc-115 (unc-115):

Annotation Number : CG31332
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0260463
Gbrowse : chr3R:5512781-5517563 (-) // 100.0 // /// chr3R:5520101-5525449 (-) // 100.0 //
Probeset : 1635725_a_at
Accessions : protein= NP_731389; /// NP_731390; /// NP_731391; /// NP_731392;, nucleotide= NM_169300; /// NM_169301; /// NM_169302; /// NM_169303;
Interpro : 0003779 // actin binding // non-traceable author statement /// 0003779 // actin binding // inferred from electronic anno
FlyMine data for FBgn0260463.
Homophila reports that CG31332 is a close match (1e-11) to human gene LHX4 (NP_203129), a gene associated with Short stature, pituitary and cerebellar defects, and small sella turcica, 606606 (3).
TRiP has 1 RNAi stocks for FBgn0260463 available for purchase.
VDRC has 3 RNAi stocks for FBgn0260463 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1005 ± 234 of 4 3.60Up
Head512 ± 214 of 4 1.80Up
Eye696 ± 414 of 4 2.49Up
Thoracicoabdominal ganglion1139 ± 324 of 4 4.10Up
Salivary gland1612 ± 844 of 4 5.75Up
Crop998 ± 214 of 4 3.60Up
Midgut1106 ± 124 of 4 3.90Up
Tubule827 ± 214 of 4 3.00Up
Hindgut1122 ± 174 of 4 4.00Up
Heart554 ± 264 of 4 1.98Up
Fat body563 ± 544 of 4 2.01Up
Ovary62 ± 44 of 4 0.20Down
Testis65 ± 24 of 4 0.20Down
Male accessory glands447 ± 14 of 4 1.60Up
Virgin spermatheca898 ± 174 of 4 3.20Up
Mated spermatheca963 ± 554 of 4 3.44Up
Adult carcass407 ± 264 of 4 1.50Up
Larval CNS1197 ± 1114 of 4 4.27Up
Larval Salivary gland1626 ± 244 of 4 5.80Up
Larval midgut1207 ± 354 of 4 4.31Up
Larval tubule581 ± 114 of 4 2.10Up
Larval hindgut1224 ± 444 of 4 4.37Up
Larval fat body336 ± 344 of 4 1.20None
Larval trachea768 ± 634 of 4 2.74Up
Larval carcass817 ± 464 of 4 2.92Up
S2 cells (growing)1112 ± 94 of 4 3.97Up
Whole fly280 ± 194 of 4



p24-related-2 (p24-2):

Annotation Number : CG33105
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053105
Gbrowse : chr3R:5517624-5518516 (-) // 100.0 // /// chr3R:5510434-5511196 (-) // 84.22 //
Probeset : 1625153_at
Accessions : protein= NP_788617;, nucleotide= NM_176440;
Pathway : 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from e
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0053105.
BioGrid reports that CG33105 interacts with CG5174 CG7813 .
VDRC has 2 RNAi stocks for FBgn0053105 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 14 of 4 1.30None
Head12 ± 12 of 4 0.90None
Eye12 ± 13 of 4 0.90None
Thoracicoabdominal ganglion16 ± 33 of 4 1.20None
Salivary gland184 ± 244 of 413.00Up
Crop20 ± 34 of 4 1.50None
Midgut46 ± 34 of 4 3.30Up
Tubule12 ± 01 of 4 0.90Down
Hindgut19 ± 14 of 4 1.40None
Heart15 ± 23 of 4 1.12None
Fat body27 ± 93 of 4 1.95None
Ovary7 ± 11 of 4 0.50None
Testis7 ± 00 of 4 0.50None
Male accessory glands73 ± 64 of 4 5.20Up
Virgin spermatheca18 ± 21 of 4 1.29None
Mated spermatheca23 ± 24 of 4 1.63None
Adult carcass36 ± 54 of 4 2.60Up
Larval CNS13 ± 54 of 4 0.94None
Larval Salivary gland74 ± 104 of 4 5.24Up
Larval midgut43 ± 44 of 4 3.06Up
Larval tubule28 ± 24 of 4 2.00Up
Larval hindgut24 ± 24 of 4 1.76Up
Larval fat body36 ± 14 of 4 2.60Up
Larval trachea12 ± 43 of 4 0.90None
Larval carcass23 ± 43 of 4 1.68None
S2 cells (growing)168 ± 114 of 411.93Up
Whole fly14 ± 23 of 4

Looking for FBgn0260463. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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